halotolerant

METPO:1000622 · CLASS · REVIEWED

A halophily preference in which an organism can tolerate high salt concentrations but does not require them for growth.

Halotolerant salt-stress response mechanism

Evidence-backed causal sketch linking halotolerance to survival under high salinity without strict salt requirement.

Halotolerant salt-stress response mechanism Interactive directed graph showing evidence-backed causal relationships for halotolerant.

Edge evidence

  • high-salt exposure tolerated by halotolerant

    Halotolerant organisms can survive elevated salinity without requiring it.

    • DOI:10.1093/femsre/fuy009 highly halotolerant representatives Review distinguishes halotolerant microorganisms in high-salt environments.
  • high-salt exposure causes osmotic stress biolink:causes

    External salinity creates osmotic stress in halotolerant organisms.

    • DOI:10.1186/1746-1448-4-2 high salt concentrations in the environment Review supports high environmental salt as the stress context.
  • compatible solutes mitigates osmotic stress METPO:2007407

    Compatible solutes are a mechanism for tolerating salt stress.

    • DOI:10.1093/femsre/fuy009 organic osmotic solutes Supports organic osmotic solutes as an osmoadaptation strategy.
  • compatible-solute transport imports compatible solutes METPO:2000208

    Uptake systems import osmoprotectants that support halotolerance.

    • DOI:10.1016/j.csbj.2021.01.030 biosynthesis and/or uptake of compatible solutes Adds explicit source support for transport-mediated compatible-solute accumulation in bacterial salt-stress responses.
  • compatible solutes contributes to stress protection RO:0002326

    Compatible solutes can stabilize cells under saline stress.

    • DOI:10.1139/cjm-2014-0233 stabilizers of intracellular proteins Haloalkaliphile review supports compatible solutes as stabilizing osmoprotectants; mechanism is shared with halotolerance.
  • stress protection enables halotolerant RO:0002327

    Stress-protection mechanisms allow tolerance of salt exposure.

    • DOI:10.1371/journal.pone.0168818 allows microorganisms to cope with high salinities Supports osmoadaptation as a mechanism for growth under salt stress.
  • osmotic stress increases compatible solute accumulation RO:0002213

    Osmotic stress drives accumulation of compatible solutes.

    • DOI:10.58088/07hg-r941 Compatible solutes are accumulated in response to osmotic stress; broad mechanistic claim across marine bacteria.
  • salt-out strategy relies on compatible solute accumulation

    The salt-out osmoadaptation strategy relies on accumulation or de novo synthesis of compatible solutes.

    • DOI:10.1038/s41598-024-63581-z 'salt-out'/'low-salt-high-compatible-solute-in-cytoplasm' strategy relies on accumulation or de-novo synthesis of organic compatible solutes; directly supports halotolerant scope.
  • ectABC operon enables ectoine biosynthesis RO:0002327

    The ectABC operon synthesizes ectoine de novo from aspartic acid.

    • DOI:10.58088/07hg-r941 Ectoine is synthesized de novo from aspartic acid via the ectABC operon; general bacterial mechanism.
  • betA/betB enables glycine betaine biosynthesis RO:0002327

    betA and betB produce glycine betaine from environmental choline.

    • DOI:10.58088/07hg-r941 Glycine betaine is produced from environmental choline via betA and betB; canonical pathway edge, broadly applicable.
  • ectoine biosynthesis produces compatible solutes METPO:2000202

    Ectoine biosynthesis yields a compatible solute supporting salt tolerance.

    • DOI:10.58088/07hg-r941 Ectoine is a compatible solute synthesized de novo via the ectABC operon.
  • glycine betaine biosynthesis produces compatible solutes METPO:2000202

    Glycine betaine biosynthesis yields a compatible solute supporting salt tolerance.

    • DOI:10.58088/07hg-r941 Glycine betaine is produced from environmental choline and acts as a compatible solute.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1093/femsre/fuy009

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000622 [-1.440, -1.500, -3.854, +0.583, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_WITH_ORGANISM_EXAMPLE · codex

    Added Halomonas massiliensis organism example with PMID-backed evidence.

  3. · ADDED_CAUSAL_GRAPH · codex

    Added DOI-backed causal graph for halotolerant salt-stress response.

  4. · CURATED_WITH_LITERATURE · codex

    Replaced PMID definition source with DOI-backed halotolerance source and added a compatible-solute transport edge to the existing causal graph.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002326×1, RO:0002327×1).

  6. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1).

  7. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007407×1).

  8. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0006970×1, CHEBI:65015×1).

  9. · FIX_NODE_GROUNDING_CURIE · claude

    Overwrote 1 causal-node grounding(s) to corrected CURIEs (phase-2 id-label fix; verified vs OAK).

  10. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000208×1).

  11. · REMOVE_REDUNDANT_SYNONYM · claude

    Removed 1 synonym(s) whose text duplicated the label (seeder redundancy; no information lost).

  12. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (6 new nodes) from the deep-research report.

  13. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 5 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×2, METPO:2000202×2, RO:0002213×1).

  14. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0019491×1, GO:0031456×1).