halotolerant
METPO:1000622 · CLASS · REVIEWED
A halophily preference in which an organism can tolerate high salt concentrations but does not require them for growth.
Halotolerant salt-stress response mechanism
Edge evidence
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high-salt exposure
tolerated by
halotolerant
Halotolerant organisms can survive elevated salinity without requiring it.
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DOI:10.1093/femsre/fuy009highly halotolerant representatives
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high-salt exposure
causes
osmotic stress
biolink:causesExternal salinity creates osmotic stress in halotolerant organisms.
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DOI:10.1186/1746-1448-4-2high salt concentrations in the environment
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compatible solutes
mitigates
osmotic stress
METPO:2007407Compatible solutes are a mechanism for tolerating salt stress.
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DOI:10.1093/femsre/fuy009organic osmotic solutes
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compatible-solute transport
imports
compatible solutes
METPO:2000208Uptake systems import osmoprotectants that support halotolerance.
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DOI:10.1016/j.csbj.2021.01.030biosynthesis and/or uptake of compatible solutes
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compatible solutes
contributes to
stress protection
RO:0002326Compatible solutes can stabilize cells under saline stress.
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DOI:10.1139/cjm-2014-0233stabilizers of intracellular proteins
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stress protection
enables
halotolerant
RO:0002327Stress-protection mechanisms allow tolerance of salt exposure.
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DOI:10.1371/journal.pone.0168818allows microorganisms to cope with high salinities
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osmotic stress
increases
compatible solute accumulation
RO:0002213Osmotic stress drives accumulation of compatible solutes.
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DOI:10.58088/07hg-r941
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salt-out strategy
relies on
compatible solute accumulation
The salt-out osmoadaptation strategy relies on accumulation or de novo synthesis of compatible solutes.
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DOI:10.1038/s41598-024-63581-z
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ectABC operon
enables
ectoine biosynthesis
RO:0002327The ectABC operon synthesizes ectoine de novo from aspartic acid.
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DOI:10.58088/07hg-r941
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betA/betB
enables
glycine betaine biosynthesis
RO:0002327betA and betB produce glycine betaine from environmental choline.
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DOI:10.58088/07hg-r941
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ectoine biosynthesis
produces
compatible solutes
METPO:2000202Ectoine biosynthesis yields a compatible solute supporting salt tolerance.
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DOI:10.58088/07hg-r941
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glycine betaine biosynthesis
produces
compatible solutes
METPO:2000202Glycine betaine biosynthesis yields a compatible solute supporting salt tolerance.
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DOI:10.58088/07hg-r941
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1093/femsre/fuy009
Parent traits (1)
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000622[-1.440, -1.500, -3.854, +0.583, …]
Nearest neighbors in embedding space
- environment halophily preference 0.604
- environment slightly halophilic 0.592
- environment euryhaline 0.572
- environment haloalkaliphilic 0.566
- environment stenohaline 0.542
- physiology chemolithoautotrophic 0.509
- environment halophilic 0.488
- physiology lithoheterotrophic 0.476
Curation history
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SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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CURATED_WITH_ORGANISM_EXAMPLE · codex
Added Halomonas massiliensis organism example with PMID-backed evidence.
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ADDED_CAUSAL_GRAPH · codex
Added DOI-backed causal graph for halotolerant salt-stress response.
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CURATED_WITH_LITERATURE · codex
Replaced PMID definition source with DOI-backed halotolerance source and added a compatible-solute transport edge to the existing causal graph.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002326×1, RO:0002327×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007407×1).
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GROUND_CAUSAL_NODES · claude
Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0006970×1, CHEBI:65015×1).
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FIX_NODE_GROUNDING_CURIE · claude
Overwrote 1 causal-node grounding(s) to corrected CURIEs (phase-2 id-label fix; verified vs OAK).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000208×1).
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REMOVE_REDUNDANT_SYNONYM · claude
Removed 1 synonym(s) whose text duplicated the label (seeder redundancy; no information lost).
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ENRICH_CAUSAL_GRAPH · claude
Added 6 evidence-backed generic edges (6 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 5 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×2, METPO:2000202×2, RO:0002213×1).
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GROUND_CAUSAL_NODES · claude
Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0019491×1, GO:0031456×1).