chemolithoautotrophic
METPO:1000637 · CLASS · REVIEWED
A trophic type in which an organism obtains energy from oxidation of inorganic compounds (lithotrophy) and carbon from carbon dioxide.
Chemolithoautotrophic energy and CO2 fixation
Edge evidence
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chemolithoautotrophic
uses electron donor
inorganic electron donor
METPO:2000009Chemolithoautotrophs obtain energy from inorganic electron donors.
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DOI:10.1016/B978-0-12-378630-2.00219-Xgrowth-supporting reductant and energy source
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inorganic electron donor
feeds electrons into
electron transport chain
METPO:2007402Donor oxidation supplies electrons to energy-conserving respiratory chains.
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DOI:10.1016/j.bbabio.2008.09.008membrane-bound electron transport chain
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electron transport chain
generates
proton motive force
biolink:producesRespiratory chains generate an electrochemical ion gradient.
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DOI:10.1016/j.bbabio.2008.09.008generation of an electrochemical ion gradient
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proton motive force
drives synthesis of
ATP
biolink:producesThe ion gradient drives ATP synthesis.
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DOI:10.1016/j.bbabio.2008.09.008drives ATP synthesis
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inorganic electron donor
supports generation of
reducing power
Electrons from inorganic donors provide reduced cofactors for biosynthesis.
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DOI:10.1016/j.biortech.2021.125768serve as reductive power
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carbon dioxide
fixed by
CO2 fixation pathway
METPO:2007404Chemolithoautotrophs use CO2 fixation pathways for carbon assimilation.
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DOI:10.1146/annurev.micro.52.1.191Carbon Dioxide Fixation in Chemoautotrophs
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ATP
enables
CO2 fixation pathway
RO:0002327ATP generated from donor oxidation supports autotrophic CO2 fixation.
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DOI:10.1128/AEM.02473-10energy required for autotrophic CO2 fixation
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reducing power
enables
CO2 fixation pathway
RO:0002327Reducing power supports reductive CO2 assimilation.
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DOI:10.1016/j.biortech.2021.125768reduction of CO2
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CO2 fixation pathway
produces
biomass
METPO:2000202CO2 fixation generates cellular biomass.
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DOI:10.1146/annurev.micro.52.1.191physiology ... of chemoautotrophic bacteria
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RuBisCO
catalyzes
CO2 fixation pathway
biolink:catalyzesRuBisCO catalyzes the carboxylation step of the Calvin-Benson-Bassham CO2 fixation cycle.
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DOI:10.1128/aem.01557-23
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carbonic anhydrase
facilitates supply of
dissolved inorganic carbon
Carbonic anhydrase interconverts CO2 and bicarbonate to facilitate dissolved inorganic carbon fixation.
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DOI:10.1128/aem.01557-23
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dissolved inorganic carbon transporter
increases availability of
dissolved inorganic carbon
DIC transporters bridge environmental inorganic carbon supply to autotrophic pathway demand.
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DOI:10.1128/aem.01557-23
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dissolved inorganic carbon
supplies substrate to
CO2 fixation pathway
Dissolved inorganic carbon supplies the CO2/bicarbonate substrate for autotrophic fixation.
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DOI:10.1128/aem.01557-23
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proton motive force
drives reverse electron transport for
reducing power
PMF can reverse the electron transport chain to regenerate NADH/NADPH reducing power for fixation.
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DOI:10.1038/s41467-023-43524-4
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1146/annurev.micro.52.1.191
Parent traits (1)
Synonyms (1)
- chemolithoautotroph
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000637[-1.631, -1.052, -4.107, +0.857, …]
Nearest neighbors in embedding space
- physiology lithoautotrophic 0.605
- physiology chemoautolithotrophic 0.600
- physiology lithoheterotrophic 0.591
- physiology mixotrophic 0.571
- physiology trophic type 0.567
- physiology lithotrophic 0.567
- physiology chemolithotrophic 0.549
- physiology chemoautotrophic 0.541
Curation history
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SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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ADDED_CAUSAL_GRAPH · codex
Added DOI-backed causal graph for inorganic donor oxidation, respiratory energy conservation, ATP/reductant generation, and CO2 fixation.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000009×1, METPO:2000202×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:produces×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007402×1, METPO:2007404×1).
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RENAME_PREDICATE_LABELS · claude
Renamed 2 causal-edge predicate label(s) to align with existing groundings: supports → enables ×2.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×2).
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GROUND_CAUSAL_NODES · claude
Grounded 4 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007502×1, METPO:1007500×1, METPO:1007503×1, METPO:1007501×1).
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RETYPE_CAUSAL_NODES · claude
Re-typed 1 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: biomass: BIOLOGICAL_PROCESS → CHEMICAL ×1.
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GROUND_CAUSAL_NODES · claude
Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0022900×1, GO:0015977×1).
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RETYPE_CAUSAL_NODES · claude
Re-typed 2 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: proton motive force: BIOLOGICAL_PROCESS → STATE ×1; reducing power: CHEMICAL → CAPACITY ×1.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:produces×1).
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ENRICH_CAUSAL_GRAPH · claude
Added 5 evidence-backed generic edges (4 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:catalyzes×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A075WF79×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A009PMS8×1).