chemolithoautotrophic

METPO:1000637 · CLASS · REVIEWED

A trophic type in which an organism obtains energy from oxidation of inorganic compounds (lithotrophy) and carbon from carbon dioxide.

Chemolithoautotrophic energy and CO2 fixation

DOI-backed graph linking inorganic donor oxidation, respiratory energy conservation, reductant generation, and autotrophic CO2 fixation.

Chemolithoautotrophic energy and CO2 fixation Interactive directed graph showing evidence-backed causal relationships for chemolithoautotrophic.

Edge evidence

  • chemolithoautotrophic uses electron donor inorganic electron donor METPO:2000009

    Chemolithoautotrophs obtain energy from inorganic electron donors.

    • DOI:10.1016/B978-0-12-378630-2.00219-X growth-supporting reductant and energy source Supports inorganic reductants as energy sources.
  • inorganic electron donor feeds electrons into electron transport chain METPO:2007402

    Donor oxidation supplies electrons to energy-conserving respiratory chains.

    • DOI:10.1016/j.bbabio.2008.09.008 membrane-bound electron transport chain Supports membrane-bound respiratory chains as redox energy-conserving systems.
  • electron transport chain generates proton motive force biolink:produces

    Respiratory chains generate an electrochemical ion gradient.

    • DOI:10.1016/j.bbabio.2008.09.008 generation of an electrochemical ion gradient Supports proton motive force generation.
  • proton motive force drives synthesis of ATP biolink:produces

    The ion gradient drives ATP synthesis.

    • DOI:10.1016/j.bbabio.2008.09.008 drives ATP synthesis Supports ATP synthesis from respiratory ion gradients.
  • inorganic electron donor supports generation of reducing power

    Electrons from inorganic donors provide reduced cofactors for biosynthesis.

    • DOI:10.1016/j.biortech.2021.125768 serve as reductive power Supports reduced cofactors generated from chemolithoautotrophic electron donors.
  • carbon dioxide fixed by CO2 fixation pathway METPO:2007404

    Chemolithoautotrophs use CO2 fixation pathways for carbon assimilation.

    • DOI:10.1146/annurev.micro.52.1.191 Carbon Dioxide Fixation in Chemoautotrophs Supports CO2 fixation in chemoautotrophic bacteria.
  • ATP enables CO2 fixation pathway RO:0002327

    ATP generated from donor oxidation supports autotrophic CO2 fixation.

    • DOI:10.1128/AEM.02473-10 energy required for autotrophic CO2 fixation Supports energy demand of autotrophic CO2 fixation.
  • reducing power enables CO2 fixation pathway RO:0002327

    Reducing power supports reductive CO2 assimilation.

    • DOI:10.1016/j.biortech.2021.125768 reduction of CO2 Supports reductant use in CO2 fixation.
  • CO2 fixation pathway produces biomass METPO:2000202

    CO2 fixation generates cellular biomass.

    • DOI:10.1146/annurev.micro.52.1.191 physiology ... of chemoautotrophic bacteria Review scope supports chemoautotrophic growth from fixed carbon.
  • RuBisCO catalyzes CO2 fixation pathway biolink:catalyzes

    RuBisCO catalyzes the carboxylation step of the Calvin-Benson-Bassham CO2 fixation cycle.

    • DOI:10.1128/aem.01557-23 Ribulose 1,5-bisphosphate carboxylase/oxygenase (RuBisCO) drives CBB-cycle CO2 fixation.
  • carbonic anhydrase facilitates supply of dissolved inorganic carbon

    Carbonic anhydrase interconverts CO2 and bicarbonate to facilitate dissolved inorganic carbon fixation.

    • DOI:10.1128/aem.01557-23 carbonic anhydrase enzymes (CA) to facilitate DIC fixation.
  • dissolved inorganic carbon transporter increases availability of dissolved inorganic carbon

    DIC transporters bridge environmental inorganic carbon supply to autotrophic pathway demand.

    • DOI:10.1128/aem.01557-23 DIC transporters bridge supply from the environment to demand by the autotrophic pathway.
  • dissolved inorganic carbon supplies substrate to CO2 fixation pathway

    Dissolved inorganic carbon supplies the CO2/bicarbonate substrate for autotrophic fixation.

    • DOI:10.1128/aem.01557-23 DIC supply bridged to demand by the autotrophic pathway.
  • proton motive force drives reverse electron transport for reducing power

    PMF can reverse the electron transport chain to regenerate NADH/NADPH reducing power for fixation.

    • DOI:10.1038/s41467-023-43524-4 The proton motive force drives ATP synthesis and can reverse the electron transport chain to regenerate NADH/NADPH.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1146/annurev.micro.52.1.191

Parent traits (1)

Synonyms (1)

  • chemolithoautotroph RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000637 [-1.631, -1.052, -4.107, +0.857, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · ADDED_CAUSAL_GRAPH · codex

    Added DOI-backed causal graph for inorganic donor oxidation, respiratory energy conservation, ATP/reductant generation, and CO2 fixation.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000009×1, METPO:2000202×1).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:produces×1).

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007402×1, METPO:2007404×1).

  6. · RENAME_PREDICATE_LABELS · claude

    Renamed 2 causal-edge predicate label(s) to align with existing groundings: supports → enables ×2.

  7. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×2).

  8. · GROUND_CAUSAL_NODES · claude

    Grounded 4 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007502×1, METPO:1007500×1, METPO:1007503×1, METPO:1007501×1).

  9. · RETYPE_CAUSAL_NODES · claude

    Re-typed 1 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: biomass: BIOLOGICAL_PROCESS → CHEMICAL ×1.

  10. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0022900×1, GO:0015977×1).

  11. · RETYPE_CAUSAL_NODES · claude

    Re-typed 2 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: proton motive force: BIOLOGICAL_PROCESS → STATE ×1; reducing power: CHEMICAL → CAPACITY ×1.

  12. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:produces×1).

  13. · ENRICH_CAUSAL_GRAPH · claude

    Added 5 evidence-backed generic edges (4 new nodes) from the deep-research report.

  14. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:catalyzes×1).

  15. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A075WF79×1).

  16. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A009PMS8×1).