lithotrophic

METPO:1000649 · CLASS · REVIEWED

A trophic type in which an organism uses inorganic compounds as electron donors for energy generation.

Lithotrophic inorganic-donor energy mechanism

DOI-backed graph linking inorganic electron donors to respiratory electron transport, proton motive force, and ATP synthesis.

Lithotrophic inorganic-donor energy mechanism Interactive directed graph showing evidence-backed causal relationships for lithotrophic.

Edge evidence

  • lithotrophic uses electron donor inorganic electron donor METPO:2000009

    Lithotrophic organisms use inorganic compounds as electron donors.

    • DOI:10.1016/B978-0-12-378630-2.00219-X inorganic atoms or molecules as a growth-supporting reductant Supports inorganic electron donors as the defining lithotrophic substrate class.
  • molecular hydrogen example of inorganic electron donor rdfs:subClassOf

    Molecular hydrogen is a representative inorganic electron donor.

    • DOI:10.21775/cimb.006.159 oxidation of hydrogen gas Supports hydrogen gas as a microbial inorganic electron donor.
  • reduced sulfur compound example of inorganic electron donor rdfs:subClassOf

    Reduced sulfur compounds are representative lithotrophic electron donors.

    • DOI:10.1111/j.1574-6976.2009.00187.x lithotrophic sulfur oxidation Supports sulfur oxidation as a lithotrophic process.
  • inorganic electron donor donates electrons to membrane electron transport chain METPO:2007403

    Electrons from inorganic donors enter respiratory electron transport.

    • DOI:10.1016/j.bbabio.2008.09.008 membrane-bound electron transport chain Supports membrane-bound redox chains as energy-conserving electron-transfer systems.
  • membrane electron transport chain generates proton motive force biolink:produces

    Respiratory redox reactions are conserved as an electrochemical ion gradient.

    • DOI:10.1016/j.bbabio.2008.09.008 generation of an electrochemical ion gradient Supports proton motive force generation by respiratory electron transport.
  • proton motive force drives synthesis of ATP biolink:produces

    Proton motive force drives ATP synthesis.

    • DOI:10.1016/j.bbabio.2008.09.008 gradient ... drives ATP synthesis Supports ATP production from the respiratory ion gradient.
  • thiosulfate oxidized by Sox multienzyme system

    Thiosulfate is oxidized by the periplasmic Sox multienzyme system.

    • DOI:10.3390/microorganisms11061436 Review: "The Sox multienzyme system... performs periplasmic thiosulfate oxidation."
  • sulfite oxidized by SoeABC sulfite dehydrogenase

    Sulfite is oxidized to sulfate by membrane-bound SoeABC sulfite dehydrogenase.

    • DOI:10.3390/microorganisms11061436 Review: "Sulfite produced is oxidized to sulfate by membrane-bound SoeABC."
  • ammonia oxidized by ammonia monooxygenase (AMO)

    Ammonia is oxidized by ammonia monooxygenase (AMO) in ammonia-oxidizing lithotrophs.

    • DOI:10.1186/s40168-025-02290-9 Key NH4+ oxidation enzymes including ammonia monooxygenase (AMO); canonical enzyme role.
  • hydroxylamine oxidized by hydroxylamine oxidoreductase (HAO)

    Hydroxylamine is oxidized by hydroxylamine oxidoreductase (HAO).

    • DOI:10.1186/s40168-025-02290-9 Key NH4+ oxidation enzymes including hydroxylamine oxidoreductase (HAO).
  • nitrite oxidized by nitrite oxidoreductase (NXR)

    Nitrite is oxidized to nitrate by nitrite oxidoreductase (NXR).

    • DOI:10.1128/mbio.00749-25 Nitrite further oxidized to nitrate by a nitrite oxidoreductase gene (nxr).
  • molecular oxygen serves as terminal acceptor for sulfur oxidation

    Molecular oxygen serves as a terminal electron acceptor for aerobic sulfur oxidation.

    • DOI:10.1038/s41579-024-01104-3 Sulfur oxidation susceptible to oxidation by electron acceptors; aerobic sulfur oxidation contexts.

Provenance

Source
METPO (2025-11-25)
Author
Luke Wang
Definition source
DOI:10.1016/B978-0-12-378630-2.00219-X

Parent traits (1)

Synonyms (2)

  • TT_lithotroph RELATED_SYNONYM · metpo.owl
  • lithotroph RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000649 [-3.967, -1.575, -4.683, +0.255, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · ADDED_CAUSAL_GRAPH · codex

    Added DOI-backed causal graph for inorganic electron donors, respiratory electron transport, proton motive force, and ATP synthesis.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000009×1).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (rdfs:subClassOf×2, biolink:produces×1).

  5. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007502×1, METPO:1007500×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0022900×1).

  7. · RETYPE_CAUSAL_NODES · claude

    Re-typed 1 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: proton motive force: BIOLOGICAL_PROCESS → STATE ×1.

  8. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:produces×1).

  9. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007403×1).

  10. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (12 new nodes) from the deep-research report.

  11. · GROUND_CAUSAL_NODES · claude

    Grounded 5 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:16094×1, CHEBI:16134×1, CHEBI:15429×1, CHEBI:15379×1, GO:0019417×1).

  12. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:16301×1).