lithotrophic
METPO:1000649 · CLASS · REVIEWED
A trophic type in which an organism uses inorganic compounds as electron donors for energy generation.
Lithotrophic inorganic-donor energy mechanism
Edge evidence
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lithotrophic
uses electron donor
inorganic electron donor
METPO:2000009Lithotrophic organisms use inorganic compounds as electron donors.
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DOI:10.1016/B978-0-12-378630-2.00219-Xinorganic atoms or molecules as a growth-supporting reductant
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molecular hydrogen
example of
inorganic electron donor
rdfs:subClassOfMolecular hydrogen is a representative inorganic electron donor.
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DOI:10.21775/cimb.006.159oxidation of hydrogen gas
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reduced sulfur compound
example of
inorganic electron donor
rdfs:subClassOfReduced sulfur compounds are representative lithotrophic electron donors.
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DOI:10.1111/j.1574-6976.2009.00187.xlithotrophic sulfur oxidation
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inorganic electron donor
donates electrons to
membrane electron transport chain
METPO:2007403Electrons from inorganic donors enter respiratory electron transport.
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DOI:10.1016/j.bbabio.2008.09.008membrane-bound electron transport chain
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membrane electron transport chain
generates
proton motive force
biolink:producesRespiratory redox reactions are conserved as an electrochemical ion gradient.
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DOI:10.1016/j.bbabio.2008.09.008generation of an electrochemical ion gradient
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proton motive force
drives synthesis of
ATP
biolink:producesProton motive force drives ATP synthesis.
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DOI:10.1016/j.bbabio.2008.09.008gradient ... drives ATP synthesis
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thiosulfate
oxidized by
Sox multienzyme system
Thiosulfate is oxidized by the periplasmic Sox multienzyme system.
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DOI:10.3390/microorganisms11061436
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sulfite
oxidized by
SoeABC sulfite dehydrogenase
Sulfite is oxidized to sulfate by membrane-bound SoeABC sulfite dehydrogenase.
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DOI:10.3390/microorganisms11061436
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ammonia
oxidized by
ammonia monooxygenase (AMO)
Ammonia is oxidized by ammonia monooxygenase (AMO) in ammonia-oxidizing lithotrophs.
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DOI:10.1186/s40168-025-02290-9
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hydroxylamine
oxidized by
hydroxylamine oxidoreductase (HAO)
Hydroxylamine is oxidized by hydroxylamine oxidoreductase (HAO).
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DOI:10.1186/s40168-025-02290-9
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nitrite
oxidized by
nitrite oxidoreductase (NXR)
Nitrite is oxidized to nitrate by nitrite oxidoreductase (NXR).
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DOI:10.1128/mbio.00749-25
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molecular oxygen
serves as terminal acceptor for
sulfur oxidation
Molecular oxygen serves as a terminal electron acceptor for aerobic sulfur oxidation.
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DOI:10.1038/s41579-024-01104-3
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Provenance
- Source
- METPO (2025-11-25)
- Author
- Luke Wang
- Definition source
- DOI:10.1016/B978-0-12-378630-2.00219-X
Parent traits (1)
Synonyms (2)
- TT_lithotroph
- lithotroph
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000649[-3.967, -1.575, -4.683, +0.255, …]
Nearest neighbors in embedding space
- physiology trophic type 0.573
- physiology chemolithoautotrophic 0.567
- physiology hydrogenotrophic 0.565
- physiology lithoautotrophic 0.563
- physiology autotrophic 0.561
- physiology carboxydotrophic 0.558
- physiology photoorganoheterotrophic 0.552
- physiology lithoheterotrophic 0.552
Curation history
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SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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ADDED_CAUSAL_GRAPH · codex
Added DOI-backed causal graph for inorganic electron donors, respiratory electron transport, proton motive force, and ATP synthesis.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000009×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (rdfs:subClassOf×2, biolink:produces×1).
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GROUND_CAUSAL_NODES · claude
Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007502×1, METPO:1007500×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0022900×1).
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RETYPE_CAUSAL_NODES · claude
Re-typed 1 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: proton motive force: BIOLOGICAL_PROCESS → STATE ×1.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:produces×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007403×1).
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ENRICH_CAUSAL_GRAPH · claude
Added 6 evidence-backed generic edges (12 new nodes) from the deep-research report.
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GROUND_CAUSAL_NODES · claude
Grounded 5 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:16094×1, CHEBI:16134×1, CHEBI:15429×1, CHEBI:15379×1, GO:0019417×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:16301×1).