lithoautotrophic

METPO:1000647 · CLASS · REVIEWED

A trophic type in which an organism obtains energy from inorganic electron donors and carbon from carbon dioxide.

Lithoautotrophic inorganic-donor CO2 fixation

DOI-backed graph linking inorganic electron donors to energy conservation, reducing power, and autotrophic CO2 fixation.

Lithoautotrophic inorganic-donor CO2 fixation Interactive directed graph showing evidence-backed causal relationships for lithoautotrophic.

Edge evidence

  • lithoautotrophic uses electron donor inorganic electron donor METPO:2000009

    Lithoautotrophy uses inorganic compounds as electron donors.

    • DOI:10.1016/B978-0-12-378630-2.00219-X inorganic atoms or molecules as a growth-supporting reductant Supports inorganic electron donors for lithotrophic growth.
  • inorganic electron donor enables respiratory energy conservation RO:0002327

    Oxidation of inorganic donors supplies redox energy.

    • DOI:10.1016/j.bbabio.2008.09.008 free energy of a redox reaction Supports energy conservation from respiratory redox reactions.
  • respiratory energy conservation generates reducing power biolink:produces

    Lithoautotrophic energy metabolism supplies reducing equivalents for biosynthesis.

    • DOI:10.1016/j.biortech.2021.125768 NADH, or ... NADPH Review discusses reduced redox cofactors generated from chemolithoautotrophic electron donors.
  • carbon dioxide fixed by autotrophic CO2 fixation METPO:2007404

    CO2 is assimilated by autotrophic carbon fixation pathways.

    • DOI:10.1128/AEM.02473-10 autotrophic CO2 fixation Supports CO2 fixation as the autotrophic carbon-assimilation process.
  • reducing power enables autotrophic CO2 fixation RO:0002327

    Reducing equivalents support conversion of CO2 into cell carbon.

    • DOI:10.1016/j.biortech.2021.125768 reduction of CO2 in the carbon fixation mechanisms Supports reductant use for CO2 reduction.
  • autotrophic CO2 fixation produces cellular carbon METPO:2000202

    Autotrophic CO2 fixation produces cellular organic carbon.

    • DOI:10.1128/AEM.02473-10 CO2 ... into cellular carbon Supports assimilation of CO2 into cellular carbon.
  • membrane-bound (de)hydrogenase drives electron transport chain

    Membrane-bound donor-oxidizing enzymes reduce the quinone pool and drive the electron transport chain.

    • DOI:10.1128/aem.00748-24 Membrane-bound (de-)hydrogenases couple donor oxidation to quinone reduction which drives the ETC.
  • electron transport chain builds proton motive force biolink:produces

    The electron transport chain builds up a proton motive force.

    • DOI:10.1128/aem.00748-24 drives the electron transport chain (ETC) to build up a proton motive force.
  • proton motive force drives ATP synthesis

    The proton motive force drives ATP synthesis.

    • DOI:10.1007/s10295-020-02309-0 This process generates a proton motive force to drive ATP synthesis.
  • reverse electron flow generates NAD(H) reducing equivalents biolink:produces

    Endergonic reverse electron flow generates NAD(H) for carbon fixation.

    • DOI:10.1007/s10295-020-02309-0 an uphill (endergonic) pathway to generate NAD(H) through reverse electron flow.
  • cytochrome bc1 and NADH dehydrogenase mediates reverse electron flow

    Cytochrome bc1 and NADH dehydrogenase mediate reverse electron transfer reducing NAD+ to NAD(H).

    • DOI:10.1007/s10295-020-02309-0 mediated by cytochrome bc1 and NADH dehydrogenase which transfer electrons from the ubiquinone pool to reduce NAD+ to NAD(H).
  • carbonic anhydrase and DIC transporters facilitates autotrophic CO2 fixation

    DIC transporters and carbonic anhydrase facilitate dissolved inorganic carbon fixation.

    • DOI:10.1128/aem.01557-23 Autotrophs make use of a toolkit of DIC transporters and carbonic anhydrase enzymes to facilitate DIC fixation; broad across autotrophs.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1128/AEM.02473-10

Parent traits (1)

Synonyms (1)

  • lithoautotroph RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000647 [-1.104, -2.675, -4.383, +0.615, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · ADDED_CAUSAL_GRAPH · codex

    Added DOI-backed causal graph for inorganic electron donors, reducing power, and autotrophic CO2 fixation.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000009×1, METPO:2000202×1).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:produces×1).

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007404×1).

  6. · RENAME_PREDICATE_LABELS · claude

    Renamed 2 causal-edge predicate label(s) to align with existing groundings: supports → enables ×2.

  7. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×2).

  8. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007502×1, METPO:1007503×1).

  9. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0015977×1).

  10. · RETYPE_CAUSAL_NODES · claude

    Re-typed 1 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: reducing power: CHEMICAL → CAPACITY ×1.

  11. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (8 new nodes) from the deep-research report.

  12. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:produces×2).

  13. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0022900×1, GO:0006754×1).