photolithoautotrophic

METPO:1000665 · CLASS · REVIEWED

A trophic type in which an organism obtains energy from light and carbon from carbon dioxide using inorganic electron donors.

Photolithoautotrophic light and inorganic-donor mechanism

DOI-backed graph linking light, inorganic electron donors, photosynthetic electron transport, and autotrophic CO2 fixation.

Photolithoautotrophic light and inorganic-donor mechanism Interactive directed graph showing evidence-backed causal relationships for photolithoautotrophic.

Edge evidence

  • photolithoautotrophic uses energy source light METPO:2000010

    Photolithoautotrophy depends on light as the energy source.

    • DOI:10.3389/fmicb.2011.00165 use light as the energy source Supports light-powered metabolism in phototrophic bacteria.
  • light regulates photosynthetic electron transport RO:0002211

    Light drives photosynthetic electron transport.

    • DOI:10.3389/fmicb.2011.00165 light-induced electron transport Supports light-driven electron transport.
  • inorganic electron donor provides electrons to photosynthetic electron transport METPO:2007403

    Inorganic electron donors supply electrons for photolithotrophic metabolism.

    • DOI:10.3390/antiox10060829 reduced sulfur compounds as an electron donor Supports reduced inorganic sulfur compounds as electron donors for anoxygenic photolithotrophy.
  • sulfide participates in sulfur oxidation biolink:participates_in

    Sulfide is an example reduced inorganic donor oxidized by phototrophic bacteria.

    • DOI:10.3390/antiox10060829 oxidizes reduced sulfur compounds Supports sulfur oxidation from reduced sulfur electron donors.
  • photosynthetic electron transport produces reducing power METPO:2000202

    Light-induced electron transport produces reductants.

    • DOI:10.3389/fmicb.2011.00165 NAD(P)H and reduced ferredoxin Supports generation of reducing equivalents.
  • carbon dioxide fixed by autotrophic CO2 fixation METPO:2007404

    CO2 is fixed during autotrophic carbon assimilation.

    • DOI:10.1128/AEM.02473-10 autotrophic CO2 fixation Supports CO2 fixation as the autotrophic carbon-assimilation process.
  • reducing power enables autotrophic CO2 fixation RO:0002327

    Reductants generated by light-driven electron transport support CO2 fixation.

    • DOI:10.3389/fmicb.2011.00165 reducing equivalent flow during photoautotrophic Supports reducing-equivalent flow in photoautotrophic growth.
  • autotrophic CO2 fixation produces biomass METPO:2000202

    Autotrophic CO2 fixation produces cellular carbon.

    • DOI:10.1128/AEM.02473-10 cellular carbon Supports assimilation of CO2 into cellular carbon.
  • photosynthetic electron transport generates NADPH biolink:produces

    Photosynthetic electron transport generates NADPH as terminal reductant.

    • DOI:10.1038/s44222-023-00093-x Ferredoxin and FNR yield NADPH as the terminal reductant of phototrophic electron transport.
  • carbonic anhydrase interconverts bicarbonate

    Carbonic anhydrase interconverts CO2 and bicarbonate, accelerating DIC equilibration.

    • DOI:10.1128/aem.01557-23 CA catalyzes CO2 <-> H2CO3 <-> HCO3- interconversion, accelerating DIC equilibration (general CCM mechanism).
  • inorganic carbon transporter imports bicarbonate METPO:2000208

    Inorganic carbon transporters import dissolved inorganic carbon species.

    • DOI:10.1128/aem.01557-23 HCO3- uptake systems bridge environmental DIC supply to fixation demand.
  • RuBisCO catalyzes autotrophic CO2 fixation biolink:catalyzes

    RuBisCO catalyzes the carboxylation step of autotrophic CO2 fixation.

    • DOI:10.1128/aem.01557-23 RuBisCO is the key CO2-specific carboxylase for autotrophic CO2 fixation (broadly accepted).
  • reducing power has part NADPH

    NADPH is a concrete reductant constituting the reducing power for biosynthesis.

    • DOI:10.1038/s44222-023-00093-x NADPH is the terminal reductant tabulated as reducing equivalent for phototrophic biosynthesis.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.3389/fmicb.2011.00165

Parent traits (1)

Synonyms (1)

  • photolithoautotroph RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000665 [-2.042, -2.782, -5.220, +0.946, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · ADDED_CAUSAL_GRAPH · codex

    Added DOI-backed causal graph for light-driven electron transport, inorganic electron donors, sulfide oxidation, and autotrophic CO2 fixation.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×2, METPO:2000010×1).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:participates_in×1).

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007404×1).

  6. · RENAME_PREDICATE_LABELS · claude

    Renamed 2 causal-edge predicate label(s) to align with existing groundings: drives → regulates ×1; supports → enables ×1.

  7. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1, RO:0002327×1).

  8. · GROUND_CAUSAL_NODES · claude

    Grounded 3 causal-node grounding field(s) via mappings/node_grounding.tsv (PATO:0001717×1, GO:0009767×1, CHEBI:15138×1).

  9. · GROUND_CAUSAL_NODES · claude

    Grounded 3 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007502×1, METPO:1007503×1, METPO:1007501×1).

  10. · RETYPE_CAUSAL_NODES · claude

    Re-typed 1 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: biomass: BIOLOGICAL_PROCESS → CHEMICAL ×1.

  11. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0015977×1).

  12. · RETYPE_CAUSAL_NODES · claude

    Re-typed 1 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: reducing power: CHEMICAL → CAPACITY ×1.

  13. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0019417×1).

  14. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007403×1).

  15. · ENRICH_CAUSAL_GRAPH · claude

    Added 5 evidence-backed generic edges (5 new nodes) from the deep-research report.

  16. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:produces×1, METPO:2000208×1, biolink:catalyzes×1).

  17. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:16474×1, UniProtKB:A0A075WF79×1).

  18. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:17544×1).

  19. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A009PMS8×1).