irregular shaped

METPO:1000691 · CLASS · REVIEWED

A cell shape lacking a consistent geometric form across individual cells of a population.

Irregular-shape loss of wall patterning

DOI-backed graph linking reduced or stochastic cell-wall patterning to inconsistent, irregular cell geometry.

Irregular-shape loss of wall patterning Interactive directed graph showing evidence-backed causal relationships for irregular shaped.

Edge evidence

  • reduced cell-wall patterning enables stochastic growth RO:0002327

    Reduced patterning permits stochastic growth-zone placement.

    • DOI:10.1146/annurev-cellbio-101011-155745 cell shape is genetically determined Supports patterning loss as a driver of inconsistent shapes.
  • stochastic growth produces variable cell geometry METPO:2000202

    Stochastic growth produces variable cell geometry.

    • DOI:10.1111/j.1574-6976.2011.00298.x coryneform morphology Supports irregular coryneform-like morphology arising from polar/apical growth without strong lateral patterning.
  • variable cell geometry manifests as irregular shaped METPO:2007400

    Variable geometry across cells manifests the irregular-shaped trait.

    • DOI:10.1146/annurev-cellbio-101011-155745 cell shape is genetically determined Supports the trait endpoint.
  • loss of MreB function disrupts MreB cytoskeletal function

    Inhibition or depletion of MreB removes curvature sensing and localized cell-wall insertion control.

    • DOI:10.1101/2024.11.22.624946 MreB filaments sense curvature and direct localized cell-wall insertion; A22 inhibition of MreB polymerization alters width and causes rounding/loss of rod shape.
  • loss of MreB function causes irregular shaped biolink:causes

    Loss of MreB-mediated localized PG insertion removes rod-shape maintenance, yielding rounding and heterogeneous morphologies.

    • DOI:10.1101/2024.11.22.624946 Inhibition of MreB polymerization causes rounding/loss of rod shape across model bacteria; a broadly conserved shape-maintenance module.
  • peptidoglycan synthase-hydrolase imbalance contributes to reduced cell-wall patterning RO:0002326

    Loss of coordination between peptidoglycan synthases and hydrolases degrades spatial control of wall synthesis.

    • DOI:10.1038/s41467-023-41082-3 Coordinated peptidoglycan synthases and hydrolases stabilize the bacterial cell wall; uncoupling them (e.g. excess hydrolase activity) accelerates loss of regular shape as a general loss-of-patterning mechanism.
  • perturbation of polar growth determinants disrupts polarized growth organization

    Disruption of apical polar growth determinants disorganizes the tip-organizing center and wall-synthesis focusing.

    • DOI:10.21203/rs.3.rs-3811693/v1 Apical determinants stabilize the tip-organizing center; their perturbation is associated with abnormal branching and mispatterned wall synthesis in filamentous bacteria.
  • perturbation of polar growth determinants produces variable cell geometry METPO:2000202

    Mispatterned apical wall synthesis from disrupted polar growth produces irregular, branched/bulged geometry.

    • DOI:10.21203/rs.3.rs-3811693/v1 Partial depletion of the polar scaffold DivIVA causes hyphal bulging and irregular branching, an irregular-shape outcome of disorganized polar growth.
  • wall-less (L-form) state manifests as irregular shaped METPO:2007400

    Absence of a cylindrical wall removes canonical shape constraints, yielding irregular, amoeboid morphology.

    • DOI:10.1038/s42003-024-07279-y Wall-less L-form cells have heterogeneous, amoeboid morphology; loss of the rigid wall removes shape constraints, a general consequence of wall absence.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1146/annurev-cellbio-101011-155745

Parent traits (1)

Synonyms (1)

  • irregular RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000691 [-4.712, -0.924, -1.303, -1.253, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed definition and causal graph linking reduced cell-wall patterning and stochastic growth to irregular morphology.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, METPO:2000202×1).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007400×1).

  5. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (6 new nodes) from the deep-research report.

  6. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 4 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1, RO:0002326×1, METPO:2000202×1, METPO:2007400×1).