flask shaped

METPO:1000675 · CLASS · REVIEWED

A cell shape in which an organism has a bulbous body with a narrower neck-like extension at one pole.

Flask-shape asymmetric polar growth

DOI-backed graph linking unipolar peptidoglycan growth and tapered neck extension to flask-shaped cell morphology.

Flask-shape asymmetric polar growth Interactive directed graph showing evidence-backed causal relationships for flask shaped.

Edge evidence

  • unipolar peptidoglycan growth regulates polar neck extension RO:0002211

    Unipolar PG growth extends one pole into a narrower neck.

    • DOI:10.1146/annurev-cellbio-101011-155745 polar growth Supports unipolar growth as the mechanism for asymmetric pole extension.
  • polar neck extension combines with bulbous body

    A narrow polar neck adjoining a wider body yields flask geometry.

    • DOI:10.1146/annurev-cellbio-101011-155745 cell shape is genetically determined Supports asymmetric growth as a genetically determined shape program.
  • bulbous body manifests as flask shaped METPO:2007400

    The combined neck+body geometry manifests flask morphology.

    • DOI:10.1146/annurev-cellbio-101011-155745 polar growth Supports the trait endpoint via asymmetric polar growth.
  • zonal polar peptidoglycan synthesis produces polar envelope outgrowth METPO:2000202

    Polarized cell-wall insertion is a general mechanism producing asymmetric bulb-plus-neck outgrowths.

    • DOI:10.1371/journal.pbio.1002565 Caulobacter prostheca arises from zonal growth at the pole; general mechanism for asymmetric morphologies.
  • position of polar PG growth zone regulates appendage position and shape RO:0002211

    Moving the localized growth zone changes where neck-like extensions form.

    • DOI:10.1371/journal.pbio.1002565 Asticcacaulis prosthecate variants result from repositioning growth zones to subpolar/bilateral sites.
  • bactofilin-M23 endopeptidase module regulates cell wall biosynthesis RO:0002211

    Conserved scaffold/hydrolase module promotes local changes in the mode of cell wall biosynthesis underlying complex shapes.

    • DOI:10.7554/elife.86577.2 Bactofilins and M23 peptidases form a conserved functional module that promotes local changes in cell wall biosynthesis.
  • bactofilin cytoskeleton regulates asymmetric compartment growth RO:0002211

    Bactofilin scaffold constrains polar compartment growth; its loss causes unconstrained asymmetric outgrowth.

    • DOI:10.7554/elife.86577.2 Loss of bactofilins causes unconstrained growth of the stalk and bud compartments.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1146/annurev-cellbio-101011-155745

Parent traits (1)

Synonyms (2)

  • flask RELATED_SYNONYM · metpo.owl
  • flask-shaped RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000675 [-2.136, -1.080, +0.747, -1.495, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed definition and causal graph linking unipolar peptidoglycan growth and neck extension to flask-shaped morphology.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007400×1).

  4. · RENAME_PREDICATE_LABELS · claude

    Renamed 1 causal-edge predicate label(s) to align with existing groundings: drives → regulates ×1.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1).

  6. · ENRICH_CAUSAL_GRAPH · claude

    Added 4 evidence-backed generic edges (8 new nodes) from the deep-research report.

  7. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 4 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×3, METPO:2000202×1).