spirochete shaped

METPO:1000693 · CLASS · REVIEWED

A cell shape in which an organism has an elongated, tightly coiled helical morphology with periplasmic flagella (endoflagella) located between the cell wall and outer membrane.

Spirochete-shape periplasmic flagella mechanism

Evidence-backed causal sketch linking spirochete morphology to the cell cylinder, periplasmic flagella, FlaB filament protein, and flat-wave or helical cell-body deformation.

Spirochete-shape periplasmic flagella mechanism Interactive directed graph showing evidence-backed causal relationships for spirochete shaped.

Edge evidence

  • FlaB builds periplasmic flagella biolink:produces

    FlaB is required for periplasmic flagellar filaments.

    • DOI:10.1073/pnas.200221797 gene encoding the major periplasmic flagellar filament protein FlaB Targeted mutagenesis of flaB removed periplasmic flagella in Borrelia burgdorferi.
  • periplasmic flagella interact with cell cylinder biolink:interacts_with

    Periplasmic flagella interact with the cell cylinder to deform the spirochete body.

    • DOI:10.1073/pnas.200221797 complex interaction between the cell cylinder and the internal periplasmic flagella Supports a physical interaction between flagella and cell cylinder.
  • periplasmic flagella confers flat-wave morphology

    Periplasmic flagella provide a skeletal function that confers flat-wave morphology.

    • DOI:10.1073/pnas.200221797 have a skeletal function Supports periplasmic flagella as morphology-shaping structures.
  • flat-wave morphology produces spirochete shaped METPO:2000202

    Flat-wave or helical deformation produces spirochete morphology.

    • DOI:10.1073/pnas.200221797 cell morphology is either a helix, a flat wave, or an irregularly shaped helix Supports spirochete-shape classes and their dependence on internal flagella-cell-body geometry.
  • periplasmic flagella distort and push cell body deformation

    Periplasmic flagella enclosed in the periplasm distort and push the cell body by flagellar motor action.

    • DOI:10.1093/pnasnexus/pgad349 spirochete flagella are enclosed in the periplasmic space and the filaments distort and push the cell body by action of the flagellar motors
  • cell body deformation produces spirochete shaped METPO:2000202

    Flagella-driven cell body deformation produces the helical or flat-wave spirochete morphology.

    • DOI:10.1093/pnasnexus/pgad349 Endoflagella-driven distortion of the cell body underlies spirochete shape.
  • FlhE prevents ectopic periplasmic filament assembly RO:0002212

    FlhE prevents ectopic assembly of flagellar filaments in the periplasm.

    • DOI:10.1038/s41467-024-50278-0 FlhE is a periplasmic, Sec-translocated protein that prevents ectopic assembly of flagellar filaments in the periplasm.
  • ectopic periplasmic filament assembly mislocalizes divisome and elongasome localization

    Ectopic periplasmic filament assembly mislocalizes divisome and elongasome complexes required for peptidoglycan synthesis.

    • DOI:10.1038/s41467-024-50278-0 periplasmic filament assembly causally mis-localizes divisome and elongasome complexes required for peptidoglycan synthesis
  • divisome and elongasome localization alters spirochete shaped

    Mislocalized divisome/elongasome alters cell curvature and rod morphology, coupling periplasmic filaments to envelope shape.

    • DOI:10.1038/s41467-024-50278-0 producing altered cell curvature/loss of rod morphology and infrequent cell lysis
  • FlgV modulates periplasmic flagella RO:0002211

    FlgV localizes to the flagellar basal body and modulates periplasmic flagellar filament assembly.

    • DOI:10.1038/s41467-024-54806-w FlgV localizes to the flagellar basal body and altering FlgV levels profoundly impacts filament assembly
  • FlgV perturbs cell division and morphology

    Reduced or aberrant FlgV levels perturb cell division and cell morphology in spirochetes.

    • DOI:10.1038/s41467-024-54806-w ΔflgV mutants exhibit defects in cell division and motility, including conjoined spirochetes; overproduction leads to cell elongation

Provenance

Source
METPO (2025-11-25)
Author
Jed Dongjin Kim-Ozaeta
Definition source
DOI:10.1073/pnas.200221797

Parent traits (1)

Synonyms (1)

  • spirochete RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000693 [-5.437, -1.510, -3.065, -0.024, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_WITH_LITERATURE · codex

    Replaced broad definition source with DOI-backed spirochete morphology evidence and added causal graph for FlaB, periplasmic flagella, cell cylinder, and flat-wave morphology.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1).

  4. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A8WEP6×1).

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:produces×1, biolink:interacts_with×1).

  6. · ENRICH_CAUSAL_GRAPH · claude

    Added 7 evidence-backed generic edges (6 new nodes) from the deep-research report.

  7. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1, RO:0002212×1, RO:0002211×1).

  8. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A192C731×1).