square shaped

METPO:1000694 · CLASS · REVIEWED

A cell shape in which an organism forms flat, square or rectangular cells.

Square-shape planar anisotropic envelope growth

DOI-backed graph linking anisotropic planar cell-envelope growth and S-layer-constrained right-angle geometry to flat square cells.

Square-shape planar anisotropic envelope growth Interactive directed graph showing evidence-backed causal relationships for square shaped.

Edge evidence

  • planar envelope growth enables right-angle growth geometry RO:0002327

    Planar envelope growth in two axes supports rectangular geometry.

    • DOI:10.1099/ijs.0.65431-0 flat square or disc-shaped cells Supports planar growth as the cellular basis for flat square cells.
  • S-layer constraints causes right-angle growth geometry biolink:causes

    The paracrystalline S-layer constrains envelope geometry toward right angles.

    • DOI:10.1146/annurev-cellbio-101011-155745 cell shape is genetically determined Supports envelope architectural constraints (e.g., S-layer) as shape determinants.
  • right-angle growth geometry manifests as square shaped METPO:2007400

    Right-angle planar geometry manifests the square-shaped trait.

    • DOI:10.1099/ijs.0.65431-0 square or disc-shaped cells Supports the trait endpoint.
  • archaeal S-layer defines cell shape METPO:2007500

    The archaeal S-layer is a primary structural determinant of cell shape.

    • DOI:10.1038/s41564-022-01215-8 S-layers are known to fulfil roles in defining the cell-shape, providing mechanical stability and functioning as molecular sieves.
  • archaeal S-layer provides mechanical stability

    The archaeal S-layer provides mechanical stability to the cell envelope.

    • DOI:10.1038/s41564-022-01215-8 S-layers are known to fulfil roles in defining the cell-shape, providing mechanical stability and functioning as molecular sieves.
  • cytoskeletal control of local growth and division axis gives rise to square shaped

    Precise cytoskeleton- and S-layer-guided control of local growth and division axis gives rise to flat geometric (square/triangular) archaeal shapes.

    • DOI:10.1038/s41564-022-01215-8 These cell shapes arise as the result of precise cellular control of local growth and the axis of division under the guidance of cytoskeletal filaments and an overlying coat of glycosylated proteins, also termed the S-layer.
  • S-layer proteins causes when lost cell shape and size defect

    Loss of S-layer proteins causes profound defects in cell shape and size, evidencing the S-layer causal role in archaeal morphology.

    • DOI:10.1038/s41564-022-01215-8 S-layer proteins were recently found to be dispensable for S.islandicus viability, but cells lacking these proteins exhibited profound defects in cell shape and size.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1099/ijs.0.65431-0

Parent traits (1)

Synonyms (1)

  • square RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000694 [-3.745, -0.587, -2.659, +0.960, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed definition and causal graph linking planar anisotropic envelope growth and S-layer constraints to square-shaped halophile morphology.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007400×1).

  5. · RENAME_PREDICATE_LABELS · claude

    Renamed 1 causal-edge predicate label(s) to align with existing groundings: shapes → causes ×1.

  6. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1).

  7. · ENRICH_CAUSAL_GRAPH · claude

    Added 4 evidence-backed generic edges (6 new nodes) from the deep-research report.

  8. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007500×1).