coccus shaped

METPO:1000668 · CLASS · REVIEWED

A cell shape in which an organism has a spherical or nearly spherical morphology, with roughly equal dimensions in all directions.

Coccus-shape septal growth mechanism

Evidence-backed causal sketch linking spherical coccus morphology to septal peptidoglycan synthesis, FtsZ-directed division, and reduced reliance on lateral elongation systems.

Coccus-shape septal growth mechanism Interactive directed graph showing evidence-backed causal relationships for coccus shaped.

Edge evidence

  • FtsZ division ring recruits penicillin-binding proteins

    FtsZ-associated division machinery recruits cell-wall enzymes for septal synthesis in cocci.

    • DOI:10.1038/nrmicro3088 one type of cell wall synthesis machinery Review describes coccal growth as relying on division-septum wall synthesis machinery.
  • penicillin-binding proteins catalyzes septal peptidoglycan synthesis biolink:catalyzes

    PBPs catalyze peptidoglycan assembly at the septum.

    • DOI:10.1038/nrmicro3088 catalysed by one type of cell wall synthesis machinery Supports wall-synthesis enzymes as the proximal machinery for septal peptidoglycan synthesis in spherical cocci.
  • septal peptidoglycan synthesis regulates coccus shaped RO:0002211

    Septum-centered peptidoglycan synthesis supports spherical coccus morphology.

    • DOI:10.1038/nrmicro3088 synthesize peptidoglycan only at the division septum Supports septal-only wall synthesis as a mechanism for spherical coccal growth.
  • lateral cell-wall elongation reduced in coccus shaped

    Cocci lack the sustained lateral elongation mode that produces rod morphology.

    • DOI:10.1038/nrmicro3088 round, rod-shaped, curved and spiral cells Review contrasts mechanisms for cocci with rod-shaped lateral growth; edge is retained as a broad mechanistic distinction rather than a universal gene-loss claim.
  • peripheral peptidoglycan synthesis negatively associated with coccus shaped

    Peripheral/mid-cell wall synthesis drives elongation away from true spherical coccus morphology.

    • DOI:10.1038/nrmicro3088 Pinho 2013: ovococci perform both septal and peripheral peptidoglycan synthesis; peripheral synthesis drives slight longitudinal elongation and the ovoid shape, distinguishing it from true cocci.
  • divisome complex mediates septal peptidoglycan synthesis

    Divisome-centered machinery mediates peptidoglycan synthesis at the septum in cocci.

    • DOI:10.1042/BSR20221664 Battaje 2023: in cocci, peptidoglycan synthesis takes place mostly at the site of division, i.e. the septum coordinated by FtsZ via the divisome complex.
  • FtsZ division ring coordinates septal peptidoglycan synthesis

    FtsZ coordinates septal peptidoglycan synthesis, linking the cytoskeletal ring to coccal septal growth.

    • DOI:10.1042/BSR20221664 Battaje 2023: peptidoglycan synthesis takes place mostly at the septum coordinated by FtsZ; broad across bacteria, especially cocci.
  • coccus shaped associated with orthogonal division planes biolink:associated_with

    Spherical cocci alternate division in two or three orthogonal planes.

    • DOI:10.1038/nrmicro3088 Pinho 2013: spherical cocci can alternate division in two or three orthogonal planes; a morphology-associated arrangement behavior.
  • peripheral peptidoglycan synthesis produces ovococcal/ovoid shape METPO:2000202

    Peripheral synthesis between equatorial rings produces ovococcal/ovoid shape, a boundary contrast to true cocci.

    • DOI:10.1038/nrmicro3088 Pinho 2013: peripheral synthesis occurring at mid-cell, between the equatorial rings, drives slight longitudinal elongation and the ovoid shape.

Provenance

Source
METPO (2025-11-25)
Author
Jed Dongjin Kim-Ozaeta
Definition source
DOI:10.1038/nrmicro3088

Parent traits (1)

Synonyms (2)

  • coccus RELATED_SYNONYM · metpo.owl
  • coccus-shaped RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000668 [+298.218, -515.508, -75.836, -35.326, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_WITH_ORGANISM_EXAMPLE · codex

    Added Staphylococcus aureus organism example with PMID-backed evidence.

  3. · CURATED_WITH_LITERATURE · codex

    Replaced PMID definition source with DOI-backed coccoid growth review and added causal graph for FtsZ-associated septal peptidoglycan synthesis and spherical morphology.

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:catalyzes×1).

  5. · RENAME_PREDICATE_LABELS · claude

    Renamed 1 causal-edge predicate label(s) to align with existing groundings: maintains → regulates ×1.

  6. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1).

  7. · ENRICH_CAUSAL_GRAPH · claude

    Added 5 evidence-backed generic edges (4 new nodes) from the deep-research report.

  8. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:associated_with×1, METPO:2000202×1).