coccus shaped
METPO:1000668 · CLASS · REVIEWED
A cell shape in which an organism has a spherical or nearly spherical morphology, with roughly equal dimensions in all directions.
Coccus-shape septal growth mechanism
Edge evidence
-
FtsZ division ring
recruits
penicillin-binding proteins
FtsZ-associated division machinery recruits cell-wall enzymes for septal synthesis in cocci.
-
DOI:10.1038/nrmicro3088one type of cell wall synthesis machinery
-
-
penicillin-binding proteins
catalyzes
septal peptidoglycan synthesis
biolink:catalyzesPBPs catalyze peptidoglycan assembly at the septum.
-
DOI:10.1038/nrmicro3088catalysed by one type of cell wall synthesis machinery
-
-
septal peptidoglycan synthesis
regulates
coccus shaped
RO:0002211Septum-centered peptidoglycan synthesis supports spherical coccus morphology.
-
DOI:10.1038/nrmicro3088synthesize peptidoglycan only at the division septum
-
-
lateral cell-wall elongation
reduced in
coccus shaped
Cocci lack the sustained lateral elongation mode that produces rod morphology.
-
DOI:10.1038/nrmicro3088round, rod-shaped, curved and spiral cells
-
-
peripheral peptidoglycan synthesis
negatively associated with
coccus shaped
Peripheral/mid-cell wall synthesis drives elongation away from true spherical coccus morphology.
-
DOI:10.1038/nrmicro3088
-
-
divisome complex
mediates
septal peptidoglycan synthesis
Divisome-centered machinery mediates peptidoglycan synthesis at the septum in cocci.
-
DOI:10.1042/BSR20221664
-
-
FtsZ division ring
coordinates
septal peptidoglycan synthesis
FtsZ coordinates septal peptidoglycan synthesis, linking the cytoskeletal ring to coccal septal growth.
-
DOI:10.1042/BSR20221664
-
-
coccus shaped
associated with
orthogonal division planes
biolink:associated_withSpherical cocci alternate division in two or three orthogonal planes.
-
DOI:10.1038/nrmicro3088
-
-
peripheral peptidoglycan synthesis
produces
ovococcal/ovoid shape
METPO:2000202Peripheral synthesis between equatorial rings produces ovococcal/ovoid shape, a boundary contrast to true cocci.
-
DOI:10.1038/nrmicro3088
-
Provenance
- Source
- METPO (2025-11-25)
- Author
- Jed Dongjin Kim-Ozaeta
- Definition source
- DOI:10.1038/nrmicro3088
Parent traits (1)
Synonyms (2)
- coccus
- coccus-shaped
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000668[+298.218, -515.508, -75.836, -35.326, …]
Nearest neighbors in embedding space
- morphology gram positive 0.687
- morphology non motile 0.565
- environment facultatively aerobic 0.501
- morphology non-spore forming 0.494
- environment anaerobic 0.413
- morphology bacillus shaped 0.314
- morphology gram negative 0.263
- environment mesophilic 0.170
Curation history
-
·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
-
·
CURATED_WITH_ORGANISM_EXAMPLE · codex
Added Staphylococcus aureus organism example with PMID-backed evidence.
-
·
CURATED_WITH_LITERATURE · codex
Replaced PMID definition source with DOI-backed coccoid growth review and added causal graph for FtsZ-associated septal peptidoglycan synthesis and spherical morphology.
-
·
GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:catalyzes×1).
-
·
RENAME_PREDICATE_LABELS · claude
Renamed 1 causal-edge predicate label(s) to align with existing groundings: maintains → regulates ×1.
-
·
GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1).
-
·
ENRICH_CAUSAL_GRAPH · claude
Added 5 evidence-backed generic edges (4 new nodes) from the deep-research report.
-
·
GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:associated_with×1, METPO:2000202×1).