gram positive
METPO:1000698 · CLASS · REVIEWED
A gram stain in which an organism retains crystal violet dye and appears purple under microscopy due to a thick peptidoglycan cell wall.
Gram-positive cell-wall dye retention mechanism
Edge evidence
-
thick peptidoglycan cell wall
retains
crystal violet-iodine complex
Thick Gram-positive cell walls retain the dye-iodine complex during decolorization.
-
DOI:10.3109/10520299609117151cell wall ... responsible for retention
-
-
wall teichoic acids
embedded in
thick peptidoglycan cell wall
biolink:located_inWall teichoic acids are major glycopolymers in the Gram-positive wall matrix.
-
DOI:10.1038/nrmicro1861peptidoglycan-attached
-
-
lipoteichoic acids
contributes to
thick peptidoglycan cell wall
RO:0002326Lipoteichoic acids are membrane-attached glycopolymers in Gram-positive cell envelopes.
-
DOI:10.1038/nrmicro1861membrane-attached
-
-
alcohol decolorization
fails to remove
crystal violet-iodine complex
Gram-positive cells retain dye complex after decolorization and remain purple.
-
DOI:10.3109/10520299609117151retention of a crystal violet:iodine complex
-
-
crystal violet-iodine complex
produces
gram positive
METPO:2000202Retained dye complex produces the observed Gram-positive staining phenotype.
-
DOI:10.1128/jb.156.2.837-845.1983crystal violet-iodine complex
-
-
iodine mordant
causes
crystal violet-iodine complex formation
biolink:causesIodine acts as a mordant, interacting with crystal violet to form large complexes.
-
DOI:10.52403/ijrr.20230934
-
-
crystal violet-iodine complex formation
produces
crystal violet-iodine complex
METPO:2000202Formation of the crystal violet-iodine complex retained within the peptidoglycan mesh.
-
DOI:10.1038/s42003-026-10072-8
-
-
peptidoglycan mesh low porosity
increases
crystal violet-iodine complex
RO:0002213Low-porosity thick peptidoglycan walls trap and retain the dye complex.
-
DOI:10.1038/s42003-026-10072-8
-
-
D-alanine esters on teichoic acids
neutralizes
teichoic-acid negative charge
D-alanine esters neutralize the phosphate-rich negative charge of teichoic acids.
-
DOI:10.1038/s41564-023-01411-0
-
-
D-alanylation of teichoic acids
increases
positively charged cell surface
RO:0002213D-alanylation of both teichoic acid types leads to a more positively charged cell surface.
-
DOI:10.1093/femsre/fuaa064
-
-
wall teichoic acids
influences
positively charged cell surface
Wall teichoic acids and their anionic/cationic balance affect cell-surface charge.
-
DOI:10.1146/annurev-micro-092412-155620
-
Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.3109/10520299609117151
Parent traits (1)
Synonyms (2)
- G_positive
- positive
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000698[+104.737, -799.711, +133.158, -97.829, …]
Nearest neighbors in embedding space
- morphology coccus shaped 0.687
- morphology non motile 0.603
- environment facultatively aerobic 0.518
- morphology non-spore forming 0.506
- morphology bacillus shaped 0.420
- environment anaerobic 0.412
- morphology spore forming 0.282
- morphology swarming motility 0.200
Curation history
-
·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
-
·
CURATED_WITH_ORGANISM_EXAMPLE · codex
Added Staphylococcus aureus organism example with PMID-backed evidence.
-
·
CURATED_WITH_LITERATURE · codex
Replaced PMID definition source with DOI-backed Gram stain source and added causal graph for Gram-positive cell-wall dye retention, peptidoglycan, wall teichoic acids, and lipoteichoic acids.
-
·
GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002326×1, METPO:2000202×1).
-
·
GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:located_in×1).
-
·
GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:28640×1).
-
·
ENRICH_CAUSAL_GRAPH · claude
Added 6 evidence-backed generic edges (7 new nodes) from the deep-research report.
-
·
GROUND_CAUSAL_PREDICATES · claude
Grounded 4 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002213×2, biolink:causes×1, METPO:2000202×1).