NaCl optimum high

METPO:1000468 · CLASS · REVIEWED

A NaCl optimum phenotype with the best-growth NaCl concentration above approximately 8% (w/v), corresponding to extreme-halophile physiology.

NaCl-optimum-high extreme-halophile setpoint

DOI-backed graph linking salt-in ion-accumulation strategy under hypersaline NaCl to a >8% (w/v) NaCl-optimum (extreme halophile).

NaCl-optimum-high extreme-halophile setpoint Interactive directed graph showing evidence-backed causal relationships for NaCl optimum high.

Edge evidence

  • hypersaline NaCl selects for salt-in strategy METPO:2007401

    Hypersaline conditions select for intracellular ion-accumulation osmoadaptation.

    • DOI:10.1186/1746-1448-4-2 KCl accumulating Halobacterium salinarum Supports the salt-in strategy in extreme-halophile lineages.
  • salt-in strategy produces NaCl optimum high METPO:2000202

    Salt-in ion accumulation yields a >8% NaCl-optimum setpoint.

    • DOI:10.1093/femsre/fuy009 extreme halophile Supports the >8% optimum as the extreme-halophile outcome.
  • NaCl optimum high is a NaCl optimum rdfs:subClassOf

    NaCl optimum high is a quantitative bin of the NaCl-optimum phenotype.

    • DOI:10.1093/femsre/fuy009 optimal NaCl Supports >8% optimum as a value within the NaCl-optimum distribution.
  • salt-in strategy increases intracellular KCl concentration RO:0002213

    Salt-in osmoadaptation accumulates high intracellular KCl.

    • DOI:10.1002/pro.5003 Halophiles accumulate intracellular concentrations of potassium chloride even above 3 M.
  • salt-in strategy requires potassium uptake system

    Salt-in strategy depends on K+ uptake systems to accumulate cytoplasmic potassium.

    • DOI:10.1002/pro.5003 Upregulating potassium-selective ion channels supports salt-in K+ accumulation.
  • Na+/H+ antiporter supports salt-in strategy

    Na+/H+ antiporter activity supports salt-in osmoadaptation via Na+ exclusion.

    • DOI:10.3390/microorganisms12081738 Na+ extrusion via Na+/H+ antiporters driven by a proton electrochemical gradient.
  • intracellular KCl concentration selects for acidic proteome METPO:2007401

    High intracellular KCl selects for an acidic proteome.

    • DOI:10.1038/s41559-024-02505-6 The salt-in strategy is concomitant with an excess of acidic amino acids.
  • acidic proteome enables protein function at high salinity RO:0002327

    Acidic proteome enables protein function at high salinity.

    • DOI:10.1038/s41559-024-02505-6 Proteome acidification preserves protein structure/function under high intracellular salt.
  • increased acidic amino-acid content increases protein solubility in high salt RO:0002213

    Increased acidic amino-acid content increases protein solubility in high salt.

    • DOI:10.1002/pro.5003 Increase the number of short, polar and acidic amino acids to improve salt-induced stabilization and solubility.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1093/femsre/fuy009

Parent traits (1)

Synonyms (2)

  • Extreme halophile EXACT_SYNONYM · metpo.owl
  • NaO_>8 RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000468 [-2.565, -2.720, +0.941, +0.988, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed definition and causal graph linking salt-in ion-accumulation strategy under hypersaline NaCl to the extreme-halophile NaCl-optimum bin.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1, rdfs:subClassOf×1).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007401×1).

  5. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007720×1).

  6. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (7 new nodes) from the deep-research report.

  7. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 4 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002213×2, METPO:2007401×1, RO:0002327×1).

  8. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A068T423×1).