NaCl delta
METPO:1000335 · CLASS · REVIEWED
A salinity phenotype with numerical limits expressing the breadth (maximum minus minimum) of NaCl concentrations supporting growth of an organism.
NaCl-delta euryhaline tolerance breadth
Edge evidence
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osmoadaptive flexibility
enables
euryhaline physiology
RO:0002327Osmoadaptive flexibility enables euryhaline growth.
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DOI:10.1186/1746-1448-4-2cope with the high salt concentrations
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euryhaline physiology
produces
tolerance breadth
METPO:2000202Euryhaline physiology produces a wide growth-supporting NaCl range.
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DOI:10.1093/femsre/fuy009salinity range
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tolerance breadth
manifests as
NaCl delta
METPO:2007400The breadth between minimum and maximum growth-supporting NaCl manifests the NaCl-delta phenotype.
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DOI:10.1093/femsre/fuy009salinity range
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compatible solute accumulation
enables
response to osmotic stress
RO:0002327Accumulation of neutral compatible solutes enables osmoadaptation and broader salt-supported growth.
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DOI:10.1128/MMBR.00181-23
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hyperosmotic upshift
causes
potassium ion uptake
biolink:causesHyperosmotic upshift triggers rapid K+ import as an early osmoadaptive response.
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DOI:10.1128/MMBR.00181-23
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potassium ion uptake
contributes to
response to osmotic stress
RO:0002326K+ accumulation is a core early osmoadaptive response to increased NaCl.
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DOI:10.1128/MMBR.00181-23
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salt-out strategy
uses
compatible solute accumulation
The salt-out strategy relies on accumulation of organic compatible solutes.
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DOI:10.3390/microorganisms12081738
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salt-in strategy
supports
high maximal NaCl tolerance
The salt-in strategy supports very high maximal salinity tolerance, extending the upper NaCl limit.
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DOI:10.3390/microorganisms12081738
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mechanosensitive channels (MscL/MscS)
protects against
hypoosmotic shock
Mechanosensitive channels act as safety valves protecting cells against sudden hypoosmotic shocks at the low-salinity end of the range.
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DOI:10.3390/microorganisms12081738
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1093/femsre/fuy009
Parent traits (2)
Children (4)
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000335[-3.596, -2.760, -3.043, +0.053, …]
Nearest neighbors in embedding space
- environment delta phenotype with numerical limits 0.944
- environment salinity phenotype with numerical limits 0.940
- environment NaCl range 0.918
- environment growth range phenotype with numerical limits 0.893
- environment temperature delta 0.886
- environment pH delta 0.884
- environment temperature range 0.878
- environment NaCl optimum 0.878
Curation history
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·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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·
CURATED_CAUSAL_GRAPH · claude
Added DOI-backed causal graph linking osmoadaptive flexibility and euryhaline physiology to the NaCl-delta breadth phenotype.
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, METPO:2000202×1).
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007400×1).
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·
ENRICH_CAUSAL_GRAPH · claude
Added 6 evidence-backed generic edges (9 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, biolink:causes×1, RO:0002326×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007720×1).
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·
GROUND_CAUSAL_NODES · claude
Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:1990573×1, GO:0006970×1).