NaCl delta

METPO:1000335 · CLASS · REVIEWED

A salinity phenotype with numerical limits expressing the breadth (maximum minus minimum) of NaCl concentrations supporting growth of an organism.

NaCl-delta euryhaline tolerance breadth

DOI-backed graph linking osmoadaptive flexibility to the breadth of the NaCl growth range (delta = max − min).

NaCl-delta euryhaline tolerance breadth Interactive directed graph showing evidence-backed causal relationships for NaCl delta.

Edge evidence

  • osmoadaptive flexibility enables euryhaline physiology RO:0002327

    Osmoadaptive flexibility enables euryhaline growth.

    • DOI:10.1186/1746-1448-4-2 cope with the high salt concentrations Supports osmoadaptive flexibility as the basis of broad-salinity growth.
  • euryhaline physiology produces tolerance breadth METPO:2000202

    Euryhaline physiology produces a wide growth-supporting NaCl range.

    • DOI:10.1093/femsre/fuy009 salinity range Supports the link between osmoadaptive physiology and tolerance breadth.
  • tolerance breadth manifests as NaCl delta METPO:2007400

    The breadth between minimum and maximum growth-supporting NaCl manifests the NaCl-delta phenotype.

    • DOI:10.1093/femsre/fuy009 salinity range Supports the trait endpoint.
  • compatible solute accumulation enables response to osmotic stress RO:0002327

    Accumulation of neutral compatible solutes enables osmoadaptation and broader salt-supported growth.

    • DOI:10.1128/MMBR.00181-23 To avoid K+-induced cytotoxicity and high ionic strength, cells accumulate or synthesize neutral compatible solutes (glycine betaine, trehalose, ectoine, proline).
  • hyperosmotic upshift causes potassium ion uptake biolink:causes

    Hyperosmotic upshift triggers rapid K+ import as an early osmoadaptive response.

    • DOI:10.1128/MMBR.00181-23 Cells import large amounts of K+ during osmotic upshift; potassium is the principal cytoplasmic cation.
  • potassium ion uptake contributes to response to osmotic stress RO:0002326

    K+ accumulation is a core early osmoadaptive response to increased NaCl.

    • DOI:10.1128/MMBR.00181-23 Cytoplasmic K+ levels ~250 mM (E. coli) to ~500 mM (C. glutamicum, L. lactis) accumulate as a core osmoadaptive response.
  • salt-out strategy uses compatible solute accumulation

    The salt-out strategy relies on accumulation of organic compatible solutes.

    • DOI:10.3390/microorganisms12081738 Salt-out excludes Na+ while accumulating organic compatible solutes like sugars, polyalcohols, ectoine, trehalose, glycine-betaine.
  • salt-in strategy supports high maximal NaCl tolerance

    The salt-in strategy supports very high maximal salinity tolerance, extending the upper NaCl limit.

    • DOI:10.3390/microorganisms12081738 Salt-out is energetically costly and less suited to saturating salinities; salt-in is favored at very high salt.
  • mechanosensitive channels (MscL/MscS) protects against hypoosmotic shock

    Mechanosensitive channels act as safety valves protecting cells against sudden hypoosmotic shocks at the low-salinity end of the range.

    • DOI:10.3390/microorganisms12081738 Mechanosensitive (Msc) channels and compatible-solute efflux systems act as safety valves during sudden hypoosmotic shocks.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1093/femsre/fuy009

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000335 [-3.596, -2.760, -3.043, +0.053, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed causal graph linking osmoadaptive flexibility and euryhaline physiology to the NaCl-delta breadth phenotype.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, METPO:2000202×1).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007400×1).

  5. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (9 new nodes) from the deep-research report.

  6. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, biolink:causes×1, RO:0002326×1).

  7. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007720×1).

  8. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:1990573×1, GO:0006970×1).