NaCl optimum low

METPO:1000465 · CLASS · REVIEWED

A NaCl optimum phenotype with the best-growth NaCl concentration at or below approximately 1% (w/v), corresponding to non-halophilic or halotolerant physiology.

NaCl-optimum-low non-halophile setpoint

DOI-backed graph linking minimal osmoadaptive load at low ambient NaCl to a low NaCl-optimum (≤1% w/v) consistent with non-halophilic or halotolerant physiology.

NaCl-optimum-low non-halophile setpoint Interactive directed graph showing evidence-backed causal relationships for NaCl optimum low.

Edge evidence

  • low ambient NaCl imposes minimal osmoadaptive load

    Low ambient NaCl imposes minimal osmoadaptive demand on the cell.

    • DOI:10.1093/femsre/fuy009 optimal NaCl Supports low-salt environments as the context for non-halophilic optima.
  • minimal osmoadaptive load produces NaCl optimum low METPO:2000202

    Minimal osmoadaptive demand yields a low NaCl-optimum setpoint.

    • DOI:10.1093/femsre/fuy009 optimal NaCl Supports low-salt optima as the non-halophile / halotolerant outcome.
  • NaCl optimum low is a NaCl optimum rdfs:subClassOf

    NaCl optimum low is a quantitative bin of the NaCl-optimum phenotype.

    • DOI:10.1093/femsre/fuy009 optimal NaCl Supports low-salt optima as a value within the NaCl-optimum distribution.
  • non-halophilic optimum NaCl (<0.2 M / ~1% w/v) defined as NaCl optimum low

    Non-halophilic optimum at <0.2 M (~1% w/v) NaCl corresponds to the NaCl-optimum-low trait.

    • DOI:10.3389/fmicb.2019.01895 non-halophilic microorganisms grow optimally at less than 0.2 M (1%) NaCl.
  • halotolerant organism is a non-halophilic optimum NaCl (<0.2 M / ~1% w/v) rdfs:subClassOf

    Halotolerant organisms are non-halophiles (low-NaCl optimum) able to grow at high salt.

    • DOI:10.1007/s40201-020-00519-3 halotolerant organisms are those non-halophilic able to grow at high salt concentrations.
  • compatible solute accumulation supports osmotic stress adaptation

    Accumulation of compatible solutes supports adaptation to osmotic stress.

    • DOI:10.1128/aem.00619-25 Bacteria respond to osmotic stress by intracellularly accumulating compatible solutes.
  • minimal osmoadaptive load reduces demand for compatible solute accumulation

    At low ambient NaCl, minimal osmoadaptive load reduces the need for compatible-solute accumulation.

    • DOI:10.1128/aem.00619-25 Compatible solutes are accumulated in response to osmotic stress; low salt imposes minimal such demand.
  • cyclic di-AMP inhibits K+ uptake systems (Trk/Ktr/Kup/KimA) RO:0002212

    Cyclic di-AMP binds gating subunits of Trk/Ktr/Kup/KimA and inhibits K+ uptake.

    • DOI:10.1128/mmbr.00181-23 gating subunits of Trk/Ktr bind cyclic di-AMP; KUP-family activity is inhibited by cyclic di-AMP.
  • cyclic di-AMP negatively regulates OpuA/OpuC compatible-solute transporters

    Cyclic di-AMP binds OpuA/OpuC importers and negatively regulates compatible-solute transport.

    • DOI:10.1128/mmbr.00181-23 c-di-AMP binds CBS and RCK_C domains of OpuA/OpuC and negatively regulates their transport activity.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1093/femsre/fuy009

Parent traits (1)

Synonyms (3)

  • Halotolerant EXACT_SYNONYM · metpo.owl
  • Non-halophile EXACT_SYNONYM · metpo.owl
  • NaO_<=1 RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000465 [-1.310, -1.240, -3.413, +3.699, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed definition and causal graph linking minimal osmoadaptive load at low ambient NaCl to the non-halophile / halotolerant NaCl-optimum bin.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1, rdfs:subClassOf×1).

  4. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (7 new nodes) from the deep-research report.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (rdfs:subClassOf×1, RO:0002212×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:71578×1).