pH delta low

METPO:1000474 · CLASS · REVIEWED

A pH delta phenotype with a growth-supporting pH breadth of approximately 1–2 pH units, characteristic of organisms with limited pH-tolerance breadth.

pH-delta-low limited-breadth pH homeostasis

DOI-backed graph linking limited pH-homeostasis flexibility to a pH growth breadth of approximately 1–2 pH units.

pH-delta-low limited-breadth pH homeostasis Interactive directed graph showing evidence-backed causal relationships for pH delta low.

Edge evidence

  • limited pH-homeostasis flexibility produces pH delta low METPO:2000202

    Limited pH-homeostasis flexibility yields a 1–2 pH-unit pH-delta breadth.

    • DOI:10.1038/nrmicro2549 pH homeostasis Supports limited pH-homeostasis flexibility as the basis of narrow breadth.
  • pH delta low is a pH delta rdfs:subClassOf

    pH delta low is a quantitative bin of the pH-delta phenotype.

    • DOI:10.1016/j.tim.2007.02.005 proton motive force Supports the 1–2 unit breadth as a value within the pH-delta distribution.
  • external pH stress challenges cytoplasmic pH homeostasis METPO:2007406

    External pH outside the maintainable cytoplasmic range challenges pH homeostasis.

    • DOI:10.1038/nrmicro2549 Diverse mechanisms for pH sensing and cytoplasmic pH homeostasis enable most bacteria to tolerate external pH outside the cytoplasmic range; general across bacteria.
  • proton motive force architecture determines pH homeostasis capacity

    PMF architecture (Delta-psi and Delta-pH balancing) determines pH homeostasis capacity.

    • DOI:10.1038/nrmicro2549 Bacteria tune and even reverse the relative magnitudes of Delta-psi and Delta-pH under pH stress; strong general mechanistic edge.
  • weak organic acids perturbs delta pH / cytoplasmic pH

    Weak organic acids cross the membrane and perturb the proton gradient / cytoplasmic pH.

    • DOI:10.1038/nrmicro2549 Uncharged weak-acid forms cross membranes and become trapped when charged, perturbing Delta-pH; general chemical-factor edge.
  • electrogenic Na+/H+ antiport supports alkaline pH homeostasis

    Electrogenic Na+/H+ antiport supports cytoplasmic pH homeostasis under alkaline stress.

    • DOI:10.1038/nrmicro2549 Under alkaline stress, inward proton transport through cation/proton antiporters is crucial; strong general transporter-mediated edge.
  • F1Fo-ATPase contributes to cytoplasmic pH homeostasis RO:0002326

    F1Fo-ATPase contributes to cytoplasmic pH homeostasis by expelling or importing H+.

    • DOI:10.1038/nrmicro2549 Respiratory complexes and proton-coupled ATPases use or generate PMF to expel or import H+; general higher-level edge.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1038/nrmicro2549

Parent traits (1)

Synonyms (1)

  • pHd_1_2 RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000474 [-1.168, -0.624, -1.427, +0.785, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed definition and causal graph linking limited pH-homeostasis flexibility to the narrow-breadth pH-delta-low bin.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1, rdfs:subClassOf×1).

  4. · ENRICH_CAUSAL_GRAPH · claude

    Added 5 evidence-backed generic edges (9 new nodes) from the deep-research report.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007406×1, RO:0002326×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0051453×1).