pH delta very low

METPO:1000473 · CLASS · REVIEWED

A pH delta phenotype with a very narrow growth-supporting pH breadth of at most approximately 1 pH unit, characteristic of stenotopic pH-sensitive physiology.

pH-delta-very-low stenotopic breadth

DOI-backed graph linking very limited pH-homeostasis flexibility to a pH growth breadth of at most ~1 pH unit.

pH-delta-very-low stenotopic breadth Interactive directed graph showing evidence-backed causal relationships for pH delta very low.

Edge evidence

  • very limited pH-homeostasis flexibility produces pH delta very low METPO:2000202

    Very limited pH-homeostasis flexibility yields a narrow pH-delta breadth.

    • DOI:10.1038/nrmicro2549 pH homeostasis Supports very limited pH-homeostasis flexibility as the basis of stenotopic breadth.
  • pH delta very low is a pH delta rdfs:subClassOf

    pH delta very low is a quantitative bin of the pH-delta phenotype.

    • DOI:10.1016/j.tim.2007.02.005 proton motive force Supports a very narrow breadth as a value within the pH-delta distribution.
  • external pH stress alters PMF partitioning (delta-pH / delta-psi)

    External pH stress alters partitioning of the proton motive force between delta-pH and delta-psi.

    • DOI:10.1038/nrmicro2549 The two PMF components, delta-psi and delta-pH, are adjustable according to pH demand and can even reverse orientation under strong pH stress; broad foundational pH-homeostasis edge.
  • constitutive pH-homeostasis machinery expression imposes energetic cost on energetic cost on growth near neutral pH

    Constitutive expression of pH-homeostatic machinery imposes an energetic cost impairing growth near neutral pH.

    • DOI:10.1038/nrmicro2549 Extremophiles often express major pH homeostatic mechanisms constitutively; this preparedness imposes an energetic cost and can impair growth at near-neutral pH (inferred breadth-constraint mechanism).
  • Na+/H+ antiporter activity enables alkaline pH homeostasis RO:0002327

    Na+/H+ antiporter activity enables alkaline pH homeostasis.

    • DOI:10.1038/nrmicro2549 Na+/H+ antiport (notably the hetero-oligomeric Mrp system) is a major, causally important strategy for alkaline pH homeostasis.
  • F1Fo-ATPase hydrolytic proton pumping promotes acid stress survival RO:0002213

    Hydrolytic F1Fo-ATPase proton pumping promotes acid stress survival.

    • DOI:10.1038/nrmicro2549 Hydrolytic F1Fo-ATPase activity can be increased for ATP-dependent H+ extrusion under acid stress; strong acid-side homeostasis mechanism.
  • glutamate decarboxylase GadB + GABA/glutamate antiporter consumes cytoplasmic proton consumption biolink:consumes

    Glutamate decarboxylase GadB coupled with a GABA/glutamate antiporter consumes cytoplasmic protons.

    • DOI:10.1038/nrmicro2549 Amino acid decarboxylases like GadB with its antiporter coupling; canonical acid-resistance mechanism consuming cytoplasmic protons.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1038/nrmicro2549

Parent traits (1)

Synonyms (1)

  • pHd_<=1 RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000473 [+1.107, -0.229, -3.624, +2.954, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed definition and causal graph linking very limited pH-homeostasis flexibility to the stenotopic pH-delta-very-low bin.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1, rdfs:subClassOf×1).

  4. · ENRICH_CAUSAL_GRAPH · claude

    Added 5 evidence-backed generic edges (10 new nodes) from the deep-research report.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, RO:0002213×1, biolink:consumes×1).