pH delta very low
METPO:1000473 · CLASS · REVIEWED
A pH delta phenotype with a very narrow growth-supporting pH breadth of at most approximately 1 pH unit, characteristic of stenotopic pH-sensitive physiology.
pH-delta-very-low stenotopic breadth
Edge evidence
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very limited pH-homeostasis flexibility
produces
pH delta very low
METPO:2000202Very limited pH-homeostasis flexibility yields a narrow pH-delta breadth.
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DOI:10.1038/nrmicro2549pH homeostasis
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pH delta very low
is a
pH delta
rdfs:subClassOfpH delta very low is a quantitative bin of the pH-delta phenotype.
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DOI:10.1016/j.tim.2007.02.005proton motive force
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external pH stress
alters
PMF partitioning (delta-pH / delta-psi)
External pH stress alters partitioning of the proton motive force between delta-pH and delta-psi.
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DOI:10.1038/nrmicro2549
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constitutive pH-homeostasis machinery expression
imposes energetic cost on
energetic cost on growth near neutral pH
Constitutive expression of pH-homeostatic machinery imposes an energetic cost impairing growth near neutral pH.
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DOI:10.1038/nrmicro2549
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Na+/H+ antiporter activity
enables
alkaline pH homeostasis
RO:0002327Na+/H+ antiporter activity enables alkaline pH homeostasis.
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DOI:10.1038/nrmicro2549
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F1Fo-ATPase hydrolytic proton pumping
promotes
acid stress survival
RO:0002213Hydrolytic F1Fo-ATPase proton pumping promotes acid stress survival.
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DOI:10.1038/nrmicro2549
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glutamate decarboxylase GadB + GABA/glutamate antiporter
consumes
cytoplasmic proton consumption
biolink:consumesGlutamate decarboxylase GadB coupled with a GABA/glutamate antiporter consumes cytoplasmic protons.
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DOI:10.1038/nrmicro2549
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1038/nrmicro2549
Parent traits (1)
Synonyms (1)
- pHd_<=1
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000473[+1.107, -0.229, -3.624, +2.954, …]
Nearest neighbors in embedding space
- environment pH delta 0.520
- environment pH phenotype with numerical limits 0.450
- environment pH range mid1 0.442
- environment delta phenotype with numerical limits 0.440
- environment pH range mid2 0.426
- environment pH optimum mid1 0.415
- environment temperature range mid1 0.410
- environment NaCl delta 0.410
Curation history
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SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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CURATED_CAUSAL_GRAPH · claude
Added DOI-backed definition and causal graph linking very limited pH-homeostasis flexibility to the stenotopic pH-delta-very-low bin.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1, rdfs:subClassOf×1).
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ENRICH_CAUSAL_GRAPH · claude
Added 5 evidence-backed generic edges (10 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, RO:0002213×1, biolink:consumes×1).