Electron transfer

METPO:1000805 · CLASS · REVIEWED

A metabolism in which electrons are transferred from an electron donor to an electron acceptor.

Electron transfer redox carrier mechanism

DOI-backed graph for electron donor/acceptor chemistry, redox proteins, membrane electron transport, and extracellular electron-transfer structures.

Electron transfer redox carrier mechanism Interactive directed graph showing evidence-backed causal relationships for Electron transfer.

Edge evidence

  • Electron transfer transfers electrons from electron donor

    Electron transfer starts from an electron donor.

    • DOI:10.1016/j.bbabio.2008.09.008 free energy of a redox reaction Supports donor-side redox chemistry.
  • electron donor transfers electrons to electron acceptor METPO:2007403

    Electron transfer moves reducing equivalents from donor to acceptor.

    • DOI:10.1016/j.bbabio.2008.09.008 electron transfer process Supports donor-to-acceptor electron flow.
  • redox protein mediates transfer between electron donor

    Redox proteins mediate biological electron-transfer steps.

    • DOI:10.1038/nrmicro.2016.93 molecular mechanisms ... exchange electrons Supports protein-mediated microbial electron exchange.
  • c-type cytochrome example of redox protein rdfs:subClassOf

    c-type cytochromes are electron-transfer proteins.

    • DOI:10.1038/nrmicro.2016.93 c-type cytochromes Supports c-type cytochromes as electron-transfer components.
  • membrane electron transport chain performs terminal acceptor reduction

    Electron transport chains deliver electrons to terminal acceptors.

    • DOI:10.1016/j.bbabio.2008.09.008 membrane-bound electron transport chain Supports membrane redox chains as electron-transfer machinery.
  • extracellular electron transfer uses structure microbial nanowire

    Some microbes use conductive appendages or nanowires for extracellular electron transfer.

    • DOI:10.1038/nrmicro.2016.93 microbial nanowires Supports nanowires as an extracellular electron-transfer mechanism.
  • extracellular electron transfer uses protein c-type cytochrome

    Extracellular electron transfer can use c-type cytochromes.

    • DOI:10.1038/nrmicro.2016.93 c-Type cytochromes Supports c-type cytochromes in extracellular electron exchange.
  • NADH dehydrogenase (Complex I) reduces ubiquinone METPO:2000017

    Complex I oxidizes NADH and reduces ubiquinone in the respiratory chain.

    • DOI:10.3390/ijms252413421 Complex I oxidizes NADH using ubiquinone (broad bacterial respiratory ETC).
  • NADH dehydrogenase (Complex I) translocates proton motive force

    Complex I couples NADH:ubiquinone oxidoreduction to transmembrane proton translocation, generating the PMF.

    • DOI:10.3390/ijms252413421 Coupling of redox reaction to vectorial translocation of four protons to generate proton motive force.
  • ubiquinol donates electrons to cytochrome bc1 complex METPO:2007403

    Ubiquinol delivers electrons from the quinone pool to the cytochrome bc1 complex.

    • DOI:10.1073/pnas.2307093120 UQH2:cyt c oxidoreductase (Complex III); electrons flow from quinone pool to the bc1 complex.
  • cytochrome bc1 complex transfers electrons to cytochrome c METPO:2007403

    The bc1 complex passes electrons onward to mobile cytochrome c.

    • DOI:10.1073/pnas.2307093120 Electrons flow to the bc1 complex and onward via cytochrome c.
  • cytochrome c transfers electrons to terminal oxidase METPO:2007403

    Cytochrome c delivers electrons to the terminal oxidase (Complex IV).

    • DOI:10.1073/pnas.2307093120 Onward via cytochrome c to terminal oxidases (Complex IV) that reduce O2 to H2O.
  • terminal oxidase reduces oxygen METPO:2000017

    The terminal oxidase reduces molecular oxygen to water in aerobic respiration.

    • DOI:10.1073/pnas.2307093120 Terminal oxidases (Complex IV) reduce O2 to H2O (broad aerobic respiration edge).

Provenance

Source
METPO (2025-11-25)
Author
Jed Dongjin Kim-Ozaeta
Definition source
DOI:10.1016/j.bbabio.2008.09.008

Parent traits (1)

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000805 [-0.425, -0.393, -1.506, +0.156, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · ADDED_CAUSAL_GRAPH · codex

    Added DOI-backed causal graph for donor-to-acceptor electron transfer, redox proteins, cytochromes, membrane chains, and extracellular nanowire-associated transfer.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (rdfs:subClassOf×1).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007403×1).

  5. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A076EJF0×1, UniProtKB:A0A072TMC1×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:17499×1, GO:0022900×1).

  7. · FIX_NODE_GROUNDING_CURIE · claude

    Overwrote 1 causal-node grounding(s) to corrected CURIEs (phase-2 id-label fix; verified vs OAK).

  8. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (8 new nodes) from the deep-research report.

  9. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 5 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007403×3, METPO:2000017×2).

  10. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:17976×1).

  11. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A061JR98×1, UniProtKB:A0A2U9ILE5×1).