Oxidative phosphorylation
METPO:1000803 · CLASS · REVIEWED
A metabolism that generates ATP through the transfer of electrons from electron donors to electron acceptors via redox reactions, coupled to the pumping of protons across a membrane to create an electrochemical gradient.
Oxidative phosphorylation chemiosmotic coupling
Edge evidence
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Oxidative phosphorylation
uses pathway
electron transport chain
Oxidative phosphorylation couples phosphorylation to respiratory electron transfer.
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DOI:10.1038/191144a0electron and hydrogen transfer
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electron transport chain
localized to
cellular membrane
biolink:located_inElectron transfer and proton translocation are membrane-coupled.
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DOI:10.1038/191144a0Chemi-Osmotic Type of Mechanism
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electron transport chain
generates
proton motive force
biolink:producesRespiratory electron transfer establishes a proton motive force.
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DOI:10.1038/s41598-019-38564-0proton motive force (pmf) established and maintained by respiratory chain enzymes
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proton motive force
regulates
F1Fo ATP synthase
RO:0002211Proton motive force energizes F1Fo ATP synthase.
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DOI:10.1038/s41598-019-38564-0energized by the proton motive force
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F1Fo ATP synthase
produces
ATP
METPO:2000202ATP synthase synthesizes ATP from ADP and phosphate.
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DOI:10.1007/BF01923429synthesis of ATP is also driven by a proton motive force
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NADH
is oxidized by
Complex I / NADH:quinone oxidoreductase (NDH-1)
Complex I oxidizes NADH at the respiratory chain entry point.
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DOI:10.3390/ijms252413421
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Complex I / NADH:quinone oxidoreductase (NDH-1)
reduces
quinone pool
METPO:2000017Complex I transfers electrons from NADH to the quinone pool.
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DOI:10.3390/ijms252413421
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Complex I / NADH:quinone oxidoreductase (NDH-1)
translocates
proton
Complex I couples redox chemistry to transmembrane proton translocation.
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DOI:10.3390/ijms252413421
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succinate
is oxidized by
succinate dehydrogenase / Complex II
Succinate dehydrogenase oxidizes succinate, reducing quinone.
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DOI:10.1007/s10863-024-10041-y
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proton translocation
generates
proton motive force
biolink:producesVectorial proton translocation establishes the proton motive force.
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DOI:10.3390/ijms252413421
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terminal oxidase
reduces
oxygen
METPO:2000017Terminal oxidases catalyze four-electron reduction of O2 to water.
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DOI:10.3390/ijms25021277
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heme-copper oxidase
translocates
proton
Heme-copper oxidases act as proton pumps contributing to PMF.
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DOI:10.3390/ijms25021277
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Provenance
- Source
- METPO (2025-11-25)
- Author
- Anthea Guo
- Definition source
- DOI:10.1038/191144a0
Parent traits (1)
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000803[-1.060, -0.950, -1.248, -0.351, …]
Nearest neighbors in embedding space
- metabolism Syntrophy 0.974
- metabolism Homoacetogenesis 0.971
- metabolism Cable bacteria metabolism 0.970
- metabolism Substrate-level phosphorylation 0.969
- metabolism Disproportionation 0.969
- metabolism Electron transfer 0.966
- metabolism photosynthesis 0.938
- metabolism iron oxidation 0.938
Curation history
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SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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ADDED_CAUSAL_GRAPH · codex
Added DOI-backed causal graph for chemiosmotic coupling, proton motive force, ATP synthase, and ATP production.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:located_in×1, biolink:produces×1).
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RENAME_PREDICATE_LABELS · claude
Renamed 1 causal-edge predicate label(s) to align with existing groundings: drives → regulates ×1.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007500×1).
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RETYPE_CAUSAL_NODES · claude
Re-typed 1 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: proton motive force: BIOLOGICAL_PROCESS → STATE ×1.
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ENRICH_CAUSAL_GRAPH · claude
Added 7 evidence-backed generic edges (10 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000017×2, biolink:produces×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:24636×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A2U9ILE5×1).