cell width large

METPO:1000890 · CLASS · REVIEWED

A cell-width phenotype in which the shorter cell dimension exceeds approximately 0.9 micrometers.

Large cell-width by elevated wall-radius set-point

DOI-backed graph linking nutrient-rich growth conditions and an elevated MreB-driven wall-radius set-point to wide rods (>0.9 μm).

Large cell-width by elevated wall-radius set-point Interactive directed graph showing evidence-backed causal relationships for cell width large.

Edge evidence

  • rich growth conditions shifts Rod-complex peptidoglycan synthesis

    Rich growth conditions shift Rod-complex activity toward a larger radius set-point.

    • DOI:10.1126/science.aaa1313 cell size scales with growth rate Supports growth-rate-dependent enlargement of cell radius.
  • Rod-complex peptidoglycan synthesis produces cell width large METPO:2000202

    Elevated Rod-complex activity yields a wide rod radius.

    • DOI:10.1146/annurev-cellbio-101011-155745 MreB-directed peptidoglycan synthesis Supports lateral PG synthesis as the producer of the wide cell radius.
  • cell width large is a cell width rdfs:subClassOf

    Large cell width is a quantitative bin of the cell-width phenotype.

    • DOI:10.1146/annurev-cellbio-101011-155745 MreB-directed peptidoglycan synthesis Supports large width as a value within the regulated cell-width distribution.
  • RodA-PBP2 allosteric activation positively regulates peptidoglycan polymerization and crosslinking

    Allosteric structural opening of RodA-PBP2 activates coupled PG polymerization and crosslinking.

    • DOI:10.1038/s41467-023-39037-9 "Structural opening couples the activation of polymerization and crosslinking and is essential in vivo."
  • RodA-PBP2 elongasome complex mediates lateral sidewall peptidoglycan insertion

    Activated RodA-PBP2 elongasome synthesizes and inserts new PG at lateral wall sites.

    • DOI:10.1073/pnas.2215237120 "The elongasome... synthesizing and inserting new PG material at dispersed sites in the lateral cell wall."
  • lateral sidewall peptidoglycan insertion contributes to Rod-complex peptidoglycan synthesis RO:0002326

    Lateral sidewall PG insertion is the Rod-complex-driven wall-elongation process that sets rod radius.

    • DOI:10.1146/annurev-cellbio-101011-155745 Lateral PG insertion is the MreB/Rod-complex activity governing rod radius.
  • MreB cytoskeletal filaments orients circumferential peptidoglycan insertion

    MreB filaments orient peptidoglycan insertion perpendicular to the long cell axis, controlling rod radius.

    • DOI:10.1073/pnas.2301987120 "MreB filaments are thought to orient it orthogonally to the long cell axis" guiding PG insertion perpendicular to the long axis.
  • Rod-complex circumferential rotation enables even peptidoglycan distribution RO:0002327

    Rotation of the Rod complex around the circumference enables evenly distributed PG insertion.

    • DOI:10.1002/mbo3.1385 "the Rod complex rotates perpendicularly to the long axis of the cell... allowing the insertion of peptidoglycan... in an evenly distributed manner."
  • MreC-MreD balance regulates PBP2 transpeptidase activity RO:0002211

    The balance between MreC and MreD determines PBP2 synthase activity.

    • DOI:10.1002/mbo3.1385 "the balance between MreC and MreD determines the activity of PBP2"
  • Lipid II required for peptidoglycan polymerization and crosslinking

    Lipid II is the substrate required for peptidoglycan polymerization by Rod/elongasome synthases.

    • DOI:10.3390/biom13050720 "GTases and TPases utilize the disaccharide pentapeptide of Lipid-II as a substrate for PG polymerization and synthesis of the PG layer."

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1146/annurev-cellbio-101011-155745

Parent traits (1)

Synonyms (1)

  • W_>0.9 RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000890 [+0.641, -3.918, -1.937, +4.002, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed causal graph linking rich growth conditions and elevated Rod-complex activity to large cell width (>0.9 μm).

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1, rdfs:subClassOf×1).

  4. · ENRICH_CAUSAL_GRAPH · claude

    Added 7 evidence-backed generic edges (11 new nodes) from the deep-research report.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002326×1, RO:0002327×1, RO:0002211×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:27692×1).