cell width large
METPO:1000890 · CLASS · REVIEWED
A cell-width phenotype in which the shorter cell dimension exceeds approximately 0.9 micrometers.
Large cell-width by elevated wall-radius set-point
Edge evidence
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rich growth conditions
shifts
Rod-complex peptidoglycan synthesis
Rich growth conditions shift Rod-complex activity toward a larger radius set-point.
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DOI:10.1126/science.aaa1313cell size scales with growth rate
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Rod-complex peptidoglycan synthesis
produces
cell width large
METPO:2000202Elevated Rod-complex activity yields a wide rod radius.
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DOI:10.1146/annurev-cellbio-101011-155745MreB-directed peptidoglycan synthesis
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cell width large
is a
cell width
rdfs:subClassOfLarge cell width is a quantitative bin of the cell-width phenotype.
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DOI:10.1146/annurev-cellbio-101011-155745MreB-directed peptidoglycan synthesis
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RodA-PBP2 allosteric activation
positively regulates
peptidoglycan polymerization and crosslinking
Allosteric structural opening of RodA-PBP2 activates coupled PG polymerization and crosslinking.
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DOI:10.1038/s41467-023-39037-9
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RodA-PBP2 elongasome complex
mediates
lateral sidewall peptidoglycan insertion
Activated RodA-PBP2 elongasome synthesizes and inserts new PG at lateral wall sites.
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DOI:10.1073/pnas.2215237120
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lateral sidewall peptidoglycan insertion
contributes to
Rod-complex peptidoglycan synthesis
RO:0002326Lateral sidewall PG insertion is the Rod-complex-driven wall-elongation process that sets rod radius.
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DOI:10.1146/annurev-cellbio-101011-155745
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MreB cytoskeletal filaments
orients
circumferential peptidoglycan insertion
MreB filaments orient peptidoglycan insertion perpendicular to the long cell axis, controlling rod radius.
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DOI:10.1073/pnas.2301987120
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Rod-complex circumferential rotation
enables
even peptidoglycan distribution
RO:0002327Rotation of the Rod complex around the circumference enables evenly distributed PG insertion.
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DOI:10.1002/mbo3.1385
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MreC-MreD balance
regulates
PBP2 transpeptidase activity
RO:0002211The balance between MreC and MreD determines PBP2 synthase activity.
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DOI:10.1002/mbo3.1385
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Lipid II
required for
peptidoglycan polymerization and crosslinking
Lipid II is the substrate required for peptidoglycan polymerization by Rod/elongasome synthases.
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DOI:10.3390/biom13050720
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1146/annurev-cellbio-101011-155745
Parent traits (1)
Synonyms (1)
- W_>0.9
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000890[+0.641, -3.918, -1.937, +4.002, …]
Nearest neighbors in embedding space
- environment pH range mid1 0.572
- environment temperature range mid1 0.557
- environment temperature range low 0.546
- environment pH range mid2 0.541
- morphology cell length medium 0.540
- environment temperature range very low 0.536
- environment pH range mid3 0.531
- environment pH range low 0.525
Curation history
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·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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·
CURATED_CAUSAL_GRAPH · claude
Added DOI-backed causal graph linking rich growth conditions and elevated Rod-complex activity to large cell width (>0.9 μm).
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1, rdfs:subClassOf×1).
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·
ENRICH_CAUSAL_GRAPH · claude
Added 7 evidence-backed generic edges (11 new nodes) from the deep-research report.
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002326×1, RO:0002327×1, RO:0002211×1).
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·
GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:27692×1).