cell length medium

METPO:1000885 · CLASS · REVIEWED

A cell-length phenotype in which the longer cell dimension lies approximately between 2 and 3 micrometers.

Medium cell-length under moderate growth

DOI-backed graph linking moderate elongation rate and the growth-rate size law to a medium cell-length range (2–3 μm).

Medium cell-length under moderate growth Interactive directed graph showing evidence-backed causal relationships for cell length medium.

Edge evidence

  • moderate growth rate feeds into growth-rate size law

    Moderate exponential growth rates engage the growth-rate size law.

    • DOI:10.1126/science.aaa1313 cell size scales with growth rate Supports growth rate as the input to the size-scaling relationship.
  • growth-rate size law produces cell length medium METPO:2000202

    At moderate growth rates the size law produces medium cell length.

    • DOI:10.1126/science.aaa1313 cell size scales with growth rate Supports medium length as the expected size at moderate growth rates.
  • cell length medium is a cell length rdfs:subClassOf

    Medium cell length is a quantitative bin of the cell-length phenotype.

    • DOI:10.1016/j.cub.2014.07.022 cell size is tightly controlled Supports medium length as a value within the regulated cell-length distribution.
  • RodA-PBP2 complex enables peptidoglycan insertion during elongation RO:0002327

    RodA glycosyltransferase and PBP2 transpeptidase together enable peptidoglycan insertion that drives elongation.

    • DOI:10.1002/mbo3.1385 RodA is a glycosyltransferase and PBP2 a transpeptidase required for cell elongation; Rod-complex rotation supports even PG insertion along the cylinder (broadly curatable general rod-bacterium mechanism).
  • MreC/MreD balance modulates PBP2 transpeptidase activity RO:0002211

    The balance between MreC and MreD modulates PBP2, the essential elongation transpeptidase.

    • DOI:10.1002/mbo3.1385 "the balance between MreC and MreD modulates PBP2 activity" - mechanistic edge for elongation control.
  • Rod complex (elongasome) increases peptidoglycan density / mechanical strength RO:0002213

    An intact Rod complex builds dense peptidoglycan; loss yields PG with large holes and reduced mechanical strength.

    • DOI:10.1002/mbo3.1385 "The Rod complex may be a determinant not only for the whole shape of peptidoglycan but also for its highly dense structure."
  • peptidoglycan density / mechanical strength maintains rod shape

    Dense peptidoglycan produced by the elongation machinery maintains rod shape, the morphology context for medium cell length.

    • DOI:10.1002/mbo3.1385 "PG determines bacterial cell shape" - elongation machinery and dense PG determine whole-cell rod shape.
  • membrane synthesis balances with PG synthesis to maintain PG-membrane envelope balance

    Balanced membrane and peptidoglycan synthesis is critical; reducing membrane synthesis restores balance when PG capacity is limited.

    • DOI:10.1128/mbio.00475-23 "Balanced synthesis of the peptidoglycan cell wall and the cell membrane is critical" - broader envelope-balance mechanism affecting elongation and shape.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1126/science.aaa1313

Parent traits (1)

Synonyms (1)

  • L_2_3 RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000885 [-0.546, -0.957, -2.038, +2.464, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed causal graph linking moderate growth rate and the growth-rate size law to medium cell length (2–3 μm).

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1, rdfs:subClassOf×1).

  4. · ENRICH_CAUSAL_GRAPH · claude

    Added 5 evidence-backed generic edges (9 new nodes) from the deep-research report.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, RO:0002211×1, RO:0002213×1).