temperature range very low

METPO:1000448 · CLASS · REVIEWED

A temperature range phenotype in which growth extends to ambient temperatures at or below approximately 10 °C, characteristic of psychrophilic growth ranges.

Temperature-range-very-low psychrophile range

DOI-backed graph linking psychrophile cold-adapted machinery to a temperature growth range reaching ≤ ~10 °C.

Temperature-range-very-low psychrophile range Interactive directed graph showing evidence-backed causal relationships for temperature range very low.

Edge evidence

  • psychrophile cold-adapted machinery enables temperature range very low RO:0002327

    Psychrophile cold-adapted machinery enables growth at ≤ 10 °C.

    • DOI:10.1038/sj.embor.7400662 decreased membrane fluidity Supports cold-adapted membranes and enzymes as enablers of growth at very low temperatures.
  • temperature range very low is a temperature range rdfs:subClassOf

    Temperature range very low is a quantitative bin of the temperature-range phenotype.

    • DOI:10.1038/sj.embor.7400662 growing well at temperatures around the freezing point of water Supports a ≤10 °C range as a value within the temperature-range distribution.
  • membrane fatty-acid desaturation increases membrane fluidity RO:0002213

    Homeoviscous adaptation via lipid desaturation maintains membrane fluidity in the cold.

    • DOI:10.1007/s42770-023-01057-4 Cells adapt membrane composition (increasing double bonds in lipids) to maintain fluidity and function.
  • low temperature activates two-component cold signaling RO:0002213

    Cold-induced membrane state changes activate two-component cold signaling.

    • DOI:10.1007/s42770-023-01057-4 Cold sensing occurs via changes in the liquid-crystalline state of membranes that activate two-component signaling systems.
  • cold-shock proteins (CspA-family) acts on mRNA/RNA secondary structure

    CspA-family RNA chaperones resolve cold-stabilized RNA structures to sustain translation.

    • DOI:10.1007/s42770-023-01057-4 Cold-shock proteins (CSPs) act on mRNAs; increased levels of nucleic-acid-binding CspA-related proteins.
  • molecular chaperones (DnaK/GroEL/GroES/Clp/TF) preserves protein folding and proteostasis in the cold

    Chaperone/protease systems counter cold-slowed folding and misfolding risk.

    • DOI:10.3389/fmicb.2023.1197797 Psychrophiles constitutively synthesize molecular chaperones; Clp/GroEL/DnaK/GroES/TF upregulated during cold shock.
  • compatible solutes (glycine betaine/trehalose/glycerol) stabilizes protein and membrane stabilization

    Osmolytes lower freezing damage and stabilize proteins and membranes.

    • DOI:10.3389/fmicb.2023.1197797 Accumulation of compatible osmolytes prevents cell shrinkage, lowers cytoplasmic freezing point, and stabilizes proteins and membranes.
  • ice-binding/antifreeze proteins inhibits ice-crystal growth/recrystallization RO:0002212

    AFPs/IBPs bind ice and inhibit ice-crystal growth and recrystallization.

    • DOI:10.3389/fmicb.2023.1197797 AFPs bind ice, inhibit ice-crystal growth, produce thermal hysteresis, and show IRI activity.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1038/sj.embor.7400662

Synonyms (2)

  • Psychrophile EXACT_SYNONYM · metpo.owl
  • TR_<=10 RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000448 [-3.031, -0.161, -1.423, +4.596, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed definition and causal graph linking psychrophile cold-adapted machinery to the temperature-range-very-low bin.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, rdfs:subClassOf×1).

  4. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (12 new nodes) from the deep-research report.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002213×2, RO:0002212×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (PATO:0001306×1, METPO:1007505×1).