cell width

METPO:1000882 · CLASS · REVIEWED

A phenotype that inheres in a cell by virtue of its shorter dimension when viewed on a plane.

Cell-width control by MreB-directed lateral cell-wall assembly

DOI-backed graph linking MreB cytoskeletal organization, Rod-complex peptidoglycan synthesis, and turgor-balanced wall mechanics to the observed cell-width phenotype.

Cell-width control by MreB-directed lateral cell-wall assembly Interactive directed graph showing evidence-backed causal relationships for cell width.

Edge evidence

  • MreB cytoskeleton enables Rod-complex peptidoglycan synthesis RO:0002327

    MreB filaments organize Rod-complex peptidoglycan synthesis along the cylinder.

    • DOI:10.1146/annurev-cellbio-101011-155745 MreB-directed peptidoglycan synthesis Supports MreB as the organizer of lateral PG synthesis.
  • Rod-complex peptidoglycan synthesis builds peptidoglycan cell wall biolink:produces

    Rod-complex peptidoglycan synthesis builds the lateral cylindrical wall.

    • DOI:10.1038/nrmicro3088 rod-shape is maintained Supports lateral PG assembly as the wall-building activity.
  • peptidoglycan cell wall regulates cell width RO:0002211

    The peptidoglycan sacculus constrains cell width against turgor.

    • DOI:10.1038/nrmicro3088 rod-shape is maintained Supports the cell wall as the structural constraint on width.
  • turgor pressure balances peptidoglycan cell wall

    Turgor pressure is mechanically balanced by the peptidoglycan wall, determining the steady-state radius.

    • DOI:10.1146/annurev-cellbio-101011-155745 MreB-directed peptidoglycan synthesis Supports wall mechanics as the determinant of steady-state cell width.
  • class A PBP (aPBP) cell-wall synthesis system regulates cell width RO:0002211

    Rod and aPBP systems act oppositely to set cell diameter; MreB-directed lateral PG synthesis is the control point governing width.

    • DOI:10.3390/biom13050720 Review states Rod and aPBP systems "act oppositely to set B. subtilis cell diameter"; MreB-directed PG synthesis identified as the control point governing cell width.
  • RodA-PBP2 core synthase enables Rod-complex peptidoglycan synthesis RO:0002327

    Activation/open state of the RodA-PBP2 core synthase couples PG polymerization and crosslinking required for elongation-based lateral wall synthesis.

    • DOI:10.1038/s41467-023-39037-9 RodA-PBP2 undergoes dynamic exchange between closed and open states; structural opening couples activation of polymerization and crosslinking and is essential in vivo.
  • Rod-complex accessory proteins MreC/MreD/RodZ regulates RodA-PBP2 core synthase RO:0002211

    Rod-complex accessory components MreC/MreD/RodZ regulate RodA-PBP2 activity and thereby lateral wall synthesis affecting width.

    • DOI:10.1038/s41467-023-39037-9 Rod complex has accessory components MreCD and RodZ; genetic studies implicated MreC as a potential regulator of enzymatic activity.
  • cell envelope bending rigidity regulates cell width RO:0002211

    Cell envelope bending rigidity constrains cell width homeostasis; width increases and saturates primarily under the control of envelope bending rigidity.

    • DOI:10.1101/2024.11.22.624946 Width increases and saturates primarily under the control of envelope bending rigidity, which constrains width homeostasis.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1146/annurev-cellbio-101011-155745

Parent traits (1)

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000882 [-1.477, -0.754, -1.899, +0.480, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed causal graph linking MreB cytoskeleton, Rod-complex peptidoglycan synthesis, cell wall, and turgor balance to cell width.

  3. · RENAME_PREDICATE_LABELS · claude

    Renamed 2 causal-edge predicate label(s) to align with existing groundings: organizes → enables ×1; constrains → regulates ×1.

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, RO:0002211×1).

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:produces×1).

  6. · ENRICH_CAUSAL_GRAPH · claude

    Added 4 evidence-backed generic edges (4 new nodes) from the deep-research report.

  7. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 4 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×3, RO:0002327×1).