cell width small

METPO:1000888 · CLASS · REVIEWED

A cell-width phenotype in which the shorter cell dimension lies approximately between 0.5 and 0.65 micrometers.

Small cell-width MreB-Rod set-point

DOI-backed graph linking MreB-organized lateral wall synthesis to a narrow rod radius set-point (0.5–0.65 μm).

Small cell-width MreB-Rod set-point Interactive directed graph showing evidence-backed causal relationships for cell width small.

Edge evidence

  • MreB cytoskeleton enables Rod-complex peptidoglycan synthesis RO:0002327

    MreB organizes lateral PG synthesis along the cylinder.

    • DOI:10.1146/annurev-cellbio-101011-155745 MreB-directed peptidoglycan synthesis Supports MreB as the lateral PG organizer.
  • Rod-complex peptidoglycan synthesis produces cell width small METPO:2000202

    Rod-complex PG synthesis maintains a narrow cylinder radius.

    • DOI:10.1038/nrmicro3088 rod-shape is maintained Supports lateral PG assembly as the producer of the narrow rod radius.
  • cell width small is a cell width rdfs:subClassOf

    Small cell width is a quantitative bin of the cell-width phenotype.

    • DOI:10.1146/annurev-cellbio-101011-155745 MreB-directed peptidoglycan synthesis Supports small width as a value within the regulated cell-width distribution.
  • MreC activates RodA-PBP2 open conformation RO:0002213

    MreC favors the open, active conformation of the RodA-PBP2 synthase.

    • DOI:10.1038/s41467-023-39037-9 MreC favors the open, active PBP2 state; PBP2 suppressor alleles bypass defective MreC and increase polymerization activity (conserved Rod complex).
  • RodA-PBP2 open conformation increases peptidoglycan polymerization and crosslinking RO:0002213

    The open RodA-PBP2 state couples activation of polymerization and crosslinking.

    • DOI:10.1038/s41467-023-39037-9 Structural opening couples activation of polymerization and crosslinking; open-state mutants show stronger polymerization (conserved SEDS-bPBP systems).
  • peptidoglycan polymerization and crosslinking contributes to Rod-complex peptidoglycan synthesis RO:0002326

    PG polymerization and crosslinking constitute the Rod-complex synthetic output.

    • DOI:10.1038/s41467-023-39037-9 Open-state activation links RodA-PBP2 conformation to peptidoglycan synthetic output of the Rod complex.
  • MreB cytoskeleton required for rod width/diameter control

    MreB is a key determinant of rod shape and steady-state diameter/width control.

    • DOI:10.1016/j.cell.2018.02.050 MreB is a key determinant of rod shape and diameter; perturbing MreB changes steady-state diameter and width control (broad, foundational).
  • rod width/diameter control produces cell width small METPO:2000202

    Stable diameter control maintains the narrow rod radius set-point.

    • DOI:10.1016/j.cell.2018.02.050 Width/diameter control governs the steady-state rod radius producing the narrow width phenotype.
  • Mg2+ inhibits peptidoglycan hydrolase activity RO:0002212

    Exogenous Mg2+ inhibits autolysins/cell-wall hydrolases.

    • DOI:10.1038/s41598-021-04294-5 Exogenous Mg2+ inhibits autolysins/CW hydrolases and compensates increased DL-endopeptidase activity (clearest environmental modifier edge).

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1146/annurev-cellbio-101011-155745

Parent traits (1)

Synonyms (1)

  • W_0.5_0.65 RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000888 [-1.239, +0.787, -0.502, +4.802, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed causal graph linking MreB-directed Rod-complex peptidoglycan synthesis to small cell width (0.5–0.65 μm).

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1, rdfs:subClassOf×1).

  4. · RENAME_PREDICATE_LABELS · claude

    Renamed 1 causal-edge predicate label(s) to align with existing groundings: organizes → enables ×1.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1).

  6. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (6 new nodes) from the deep-research report.

  7. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 5 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002213×2, RO:0002326×1, METPO:2000202×1, RO:0002212×1).

  8. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:18420×1).

  9. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A1L9R356×1).