cell width small
METPO:1000888 · CLASS · REVIEWED
A cell-width phenotype in which the shorter cell dimension lies approximately between 0.5 and 0.65 micrometers.
Small cell-width MreB-Rod set-point
Edge evidence
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MreB cytoskeleton
enables
Rod-complex peptidoglycan synthesis
RO:0002327MreB organizes lateral PG synthesis along the cylinder.
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DOI:10.1146/annurev-cellbio-101011-155745MreB-directed peptidoglycan synthesis
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Rod-complex peptidoglycan synthesis
produces
cell width small
METPO:2000202Rod-complex PG synthesis maintains a narrow cylinder radius.
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DOI:10.1038/nrmicro3088rod-shape is maintained
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cell width small
is a
cell width
rdfs:subClassOfSmall cell width is a quantitative bin of the cell-width phenotype.
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DOI:10.1146/annurev-cellbio-101011-155745MreB-directed peptidoglycan synthesis
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MreC
activates
RodA-PBP2 open conformation
RO:0002213MreC favors the open, active conformation of the RodA-PBP2 synthase.
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DOI:10.1038/s41467-023-39037-9
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RodA-PBP2 open conformation
increases
peptidoglycan polymerization and crosslinking
RO:0002213The open RodA-PBP2 state couples activation of polymerization and crosslinking.
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DOI:10.1038/s41467-023-39037-9
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peptidoglycan polymerization and crosslinking
contributes to
Rod-complex peptidoglycan synthesis
RO:0002326PG polymerization and crosslinking constitute the Rod-complex synthetic output.
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DOI:10.1038/s41467-023-39037-9
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MreB cytoskeleton
required for
rod width/diameter control
MreB is a key determinant of rod shape and steady-state diameter/width control.
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DOI:10.1016/j.cell.2018.02.050
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rod width/diameter control
produces
cell width small
METPO:2000202Stable diameter control maintains the narrow rod radius set-point.
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DOI:10.1016/j.cell.2018.02.050
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Mg2+
inhibits
peptidoglycan hydrolase activity
RO:0002212Exogenous Mg2+ inhibits autolysins/cell-wall hydrolases.
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DOI:10.1038/s41598-021-04294-5
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1146/annurev-cellbio-101011-155745
Parent traits (1)
Synonyms (1)
- W_0.5_0.65
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000888[-1.239, +0.787, -0.502, +4.802, …]
Nearest neighbors in embedding space
- environment pH range low 0.592
- environment pH range mid2 0.587
- morphology cell length small 0.587
- environment temperature delta mid2 0.572
- environment pH optimum mid1 0.567
- environment pH range mid1 0.563
- morphology cell width 0.558
- environment pH range mid3 0.554
Curation history
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·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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·
CURATED_CAUSAL_GRAPH · claude
Added DOI-backed causal graph linking MreB-directed Rod-complex peptidoglycan synthesis to small cell width (0.5–0.65 μm).
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1, rdfs:subClassOf×1).
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·
RENAME_PREDICATE_LABELS · claude
Renamed 1 causal-edge predicate label(s) to align with existing groundings: organizes → enables ×1.
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1).
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·
ENRICH_CAUSAL_GRAPH · claude
Added 6 evidence-backed generic edges (6 new nodes) from the deep-research report.
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 5 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002213×2, RO:0002326×1, METPO:2000202×1, RO:0002212×1).
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·
GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:18420×1).
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·
GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A1L9R356×1).