NaCl range low
METPO:1000469 · CLASS · REVIEWED
A NaCl range phenotype in which the upper bound of growth-supporting NaCl concentration is at or below approximately 1% (w/v), characteristic of non-halophilic or halotolerant organisms.
NaCl-range-low non-halophile range
Edge evidence
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limited high-salt tolerance
produces
NaCl range low
METPO:2000202Limited tolerance to elevated NaCl caps growth at low salt.
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DOI:10.1093/femsre/fuy009salinity range
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NaCl range low
is a
NaCl range
rdfs:subClassOfNaCl range low is a quantitative bin of the NaCl-range phenotype.
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DOI:10.1093/femsre/fuy009salinity range
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NaCl concentration
causes
hyperosmotic stress
biolink:causesIncreased external NaCl concentration causes hyperosmotic stress.
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DOI:10.1093/femsml/uqad020
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hyperosmotic stress
induces
compatible solute accumulation
Hyperosmotic stress induces accumulation of compatible solutes.
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DOI:10.1093/femsml/uqad020
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hypoosmotic shock
opens
mechanosensitive channels MscL/MscS
Hypoosmotic shock opens mechanosensitive channels MscL/MscS to prevent rupture.
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DOI:10.1093/femsml/uqad020
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cyclic di-AMP
inhibits
OpuA/OpuC compatible-solute importers
RO:0002212c-di-AMP binds and inhibits OpuA/OpuC compatible-solute importers.
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DOI:10.1128/mmbr.00181-23
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choline uptake
enables
glycine betaine biosynthesis
RO:0002327Choline uptake enables synthesis of glycine betaine, a key compatible solute.
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DOI:10.1126/sciadv.ado6229
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1093/femsre/fuy009
Parent traits (1)
Synonyms (3)
- Halotolerant
- Non-halophile
- NaR_<=1
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000469[-3.957, -1.727, +0.312, +1.025, …]
Nearest neighbors in embedding space
- environment NaCl range mid1 0.909
- environment NaCl range mid2 0.844
- environment NaCl delta mid2 0.807
- environment temperature optimum mid2 0.746
- environment pH range mid2 0.739
- environment pH range mid1 0.731
- environment pH range mid3 0.730
- environment pH range low 0.726
Curation history
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·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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CURATED_CAUSAL_GRAPH · claude
Added DOI-backed definition and causal graph linking limited high-salt tolerance to the non-halophile NaCl-range bin.
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1, rdfs:subClassOf×1).
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·
ENRICH_CAUSAL_GRAPH · claude
Added 5 evidence-backed generic edges (9 new nodes) from the deep-research report.
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1, RO:0002212×1, RO:0002327×1).
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·
GROUND_CAUSAL_NODES · claude
Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:71578×1, GO:0031456×1).