NaCl range mid2

METPO:1000471 · CLASS · REVIEWED

A NaCl range phenotype in which the growth-supporting NaCl range spans approximately 3–8% (w/v), characteristic of moderate-halophile organisms.

NaCl-range-mid2 moderate-halophile range

DOI-backed graph linking robust osmoadaptive tolerance to a 3–8% (w/v) NaCl growth range.

NaCl-range-mid2 moderate-halophile range Interactive directed graph showing evidence-backed causal relationships for NaCl range mid2.

Edge evidence

  • robust osmoadaptive tolerance produces NaCl range mid2 METPO:2000202

    Robust osmoadaptive tolerance yields a 3–8% NaCl growth range.

    • DOI:10.1093/femsre/fuy009 moderate halophile Supports the 3–8% range as the moderate-halophile outcome.
  • NaCl range mid2 is a NaCl range rdfs:subClassOf

    NaCl range mid2 is a quantitative bin of the NaCl-range phenotype.

    • DOI:10.1093/femsre/fuy009 salinity range Supports the 3–8% range as a value within the NaCl-range distribution.
  • ectABC operon enables biosynthesis of ectoine

    The ectABC operon encodes the conserved ectoine biosynthesis pathway.

    • DOI:10.3389/fmicb.2023.1192059 ectoine biosynthesis relies on ectABC; repeatedly supported across taxa.
  • ectoine positively contributes to NaCl range mid2

    Ectoine accumulation supports sustained growth/tolerance at 6-8% NaCl.

    • DOI:10.1186/s12934-024-02358-5 Within tolerable range (1-8% NaCl shock) ectoine rapidly becomes the dominant osmoprotectant.
  • Na+ and K+ ion uptake rapidly balances osmotic pressure balance

    Uptake of Na+ and K+ ions rapidly balances osmotic pressure after NaCl upshift.

    • DOI:10.1186/s12934-024-02358-5 Cells urgently balanced surging osmotic pressure by uptaking sodium and potassium ions.
  • osmotic pressure balance contributes to robust osmoadaptive tolerance RO:0002326

    Balancing osmotic pressure underpins robust osmoadaptive tolerance.

    • DOI:10.1186/s12934-024-02358-5 Rapid ion-flux osmotic balancing is part of the osmoadaptive response sustaining growth.
  • intracellular glutamate/glutamine pools provides early osmotic buffering for robust osmoadaptive tolerance

    Increased glutamate/glutamine pools provide early osmotic buffering during NaCl shock.

    • DOI:10.1186/s12934-024-02358-5 Augmenting intracellular amino acid pools, particularly glutamate and glutamine, buffers early osmotic stress.
  • BetA/BetB pathway enables biosynthesis of glycine betaine

    BetA and BetB convert choline to glycine betaine, a compatible solute.

    • DOI:10.3389/fmicb.2023.1192059 Choline to glycine betaine via BetA and BetB; conserved across moderate halophiles.
  • glycine betaine positively contributes to robust osmoadaptive tolerance

    Glycine betaine acts as a compatible solute supporting osmoadaptive tolerance.

    • DOI:10.3389/fmicb.2023.1192059 Glycine betaine biosynthesis/uptake supports compatible-solute-based osmoadaptation.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1093/femsre/fuy009

Parent traits (1)

Synonyms (3)

  • Halotolerant EXACT_SYNONYM · metpo.owl
  • Moderate halophile EXACT_SYNONYM · metpo.owl
  • NaR_3_to_8 RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000471 [-2.730, -1.359, +0.847, +2.066, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed definition and causal graph linking robust osmoadaptive tolerance to the moderate-halophile NaCl-range bin.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1, rdfs:subClassOf×1).

  4. · ENRICH_CAUSAL_GRAPH · claude

    Added 7 evidence-backed generic edges (7 new nodes) from the deep-research report.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002326×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:27592×1, CHEBI:17750×1).