temperature range mid3

METPO:1000452 · CLASS · REVIEWED

A temperature range phenotype in which the growth-supporting ambient temperature range spans approximately 30–34 °C, characteristic of mesophilic physiology.

Temperature-range-mid3 upper-mesophile range

DOI-backed graph linking upper-mesophile adaptation to a temperature growth range of approximately 30–34 °C.

Temperature-range-mid3 upper-mesophile range Interactive directed graph showing evidence-backed causal relationships for temperature range mid3.

Edge evidence

  • upper-mesophile adaptation enables temperature range mid3 RO:0002327

    Upper-mesophile adaptation enables growth across 30–34 °C.

    • DOI:10.1146/annurev-micro-091313-103612 more unsaturated fatty acids Supports upper-mesophile homeoviscous adaptation as the range mechanism.
  • temperature range mid3 is a temperature range rdfs:subClassOf

    Temperature range mid3 is a quantitative bin of the temperature-range phenotype.

    • DOI:10.1016/s0300-9629(97)00003-0 adapted to environments of high temperature Supports the 30–34 °C range as a value within the temperature-range distribution.
  • membrane order / fluidity state drives DesK kinase-dominant state

    Increased membrane order (reduced fluidity) drives DesK to a kinase-dominant state; membrane physical state is the proximate signal.

    • DOI:10.1128/mmbr.00069-23 increased membrane order (reduced fluidity) drives DesK to a kinase-dominant state
  • DesK phosphorylates DesR

    Core two-component signaling step linking membrane physical state to transcriptional response.

    • DOI:10.1128/spectrum.03925-23 DesK autophosphorylates (His188) and phosphorylates DesR
  • phosphorylated DesR activates transcription of des (acyl-lipid desaturase)

    DesR-P tetramerizes, binds the des promoter and induces lipid desaturation to restore membrane fluidity.

    • DOI:10.1128/spectrum.03925-23 P-DesR tetramerizes, binds Pdes, and activates des expression
  • des (acyl-lipid desaturase) introduces double bonds into membrane fatty acyl chains

    Des-mediated unsaturation fluidizes the membrane and reduces bilayer thickness.

    • DOI:10.1128/spectrum.03925-23 Des introduces double bonds into fatty acyl chains, fluidizing the membrane and reducing thickness
  • temperature decrease causes membrane rigidification and increased thickness biolink:causes

    General physical trigger underlying homeoviscous adaptation across microbes.

    • DOI:10.1007/s42770-023-01057-4 membrane rigidification and increased thickness are proposed as sensing signals that trigger adaptive responses
  • homeoviscous adaptation maintains liquid-crystalline membrane state

    Broad mechanism relevant to upper-mesophile growth: cells preserve membrane function across temperature fluctuations.

    • DOI:10.1007/s42770-023-01057-4 maintain the liquid-crystalline phase at low temperature

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1146/annurev-micro-091313-103612

Synonyms (2)

  • Mesophilie EXACT_SYNONYM · metpo.owl
  • TR_30_to_34 RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000452 [-1.351, +1.368, -2.814, +2.551, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed definition and causal graph linking upper-mesophile adaptation to the temperature-range-mid3 bin.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, rdfs:subClassOf×1).

  4. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (11 new nodes) from the deep-research report.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A067Z5N7×1, UniProtKB:A0A067Z2X2×1).