mixed-acid fermentation

traitmech:000027 · CLASS · REVIEWED

A fermentation in which sugars are converted via the glycolytic pathway to a mixture of acids (lactic, acetic, formic, succinic) plus ethanol, CO2 and H2. Characteristic of enteric bacteria such as Escherichia coli.

Mixed-acid fermentation yields a spectrum of acids plus ethanol and gases

Evidence-backed causal sketch linking glycolytic sugar catabolism to mixed acid + ethanol + CO2 + H2 production in enterobacteria.

Mixed-acid fermentation yields a spectrum of acids plus ethanol and gases Interactive directed graph showing evidence-backed causal relationships for mixed-acid fermentation.

Edge evidence

  • mixed-acid fermentation participates in fermentation biolink:participates_in

    Mixed-acid fermentation is a class of fermentation metabolism.

    • DOI:10.3389/fmicb.2021.703525 Energy-conservation review lists the mixed-acid product spectrum.
  • mixed-acid fermentation produces mixed acid + ethanol + CO2/H2 products METPO:2000202

    The pathway yields the characteristic acid + ethanol + gas spectrum.

    • DOI:10.3390/molecules31020333 Classical-fermentation review describes mixed-acid fermentation by enterobacteria.
  • mixed-acid fermentation has output pyruvate

    Glycolysis upstream of mixed-acid fermentation produces pyruvate.

    • DOI:10.35812/cellulosechemtechnol.2024.58.90 Pyruvate, ATP, and NADH are produced when glucose or other carbon sources reach the primary glycolytic pathway.
  • pyruvate formate lyase (PflB) catalyzes conversion of pyruvate

    PflB cleaves pyruvate into formate and acetyl-CoA.

    • DOI:10.1128/iai.00176-23 Pyruvate formate lyase (PflB) catalyzes the conversion of pyruvate into formate and acetyl-CoA.
  • pyruvate formate lyase (PflB) produces formate METPO:2000202

    PflB cleavage of pyruvate yields formate.

    • DOI:10.1128/iai.00176-23 Pyruvate formate lyase (PflB) catalyzes the conversion of pyruvate into formate and acetyl-CoA.
  • phosphotransacetylase / acetate kinase (Pta/AckA) converts acetate

    Pta and AckA convert acetyl-CoA to acetate (with ATP generation).

    • DOI:10.1128/iai.00176-23 Acetyl-CoA is further metabolized by Pta and AckA to generate acetate.
  • formate induces synthesis of formate hydrogenlyase complex (FHL)

    Formate induces synthesis of the membrane-bound FHL complex.

    • DOI:10.1128/aem.01472-24 Formate induces the synthesis of the membrane-bound FHL complex that catalyzes formate disproportionation into CO2 and H2.
  • formate hydrogenlyase complex (FHL) produces molecular hydrogen METPO:2000202

    FHL disproportionates formate into CO2 and H2.

    • DOI:10.1128/aem.01472-24 Formate is disproportionated into CO2 and H2 by the formate hydrogenlyase complex via FdhF and hydrogenase 3 (HycE).
  • formate hydrogenlyase complex (FHL) produces carbon dioxide METPO:2000202

    FHL disproportionates formate into CO2 and H2.

    • DOI:10.1128/aem.01472-24 Formate is disproportionated into CO2 and H2 by the formate hydrogenlyase complex.
  • acidic conditions positively regulates formate hydrogenlyase complex (FHL)

    Acidic conditions favor FHL-mediated formate cleavage.

    • DOI:10.35812/cellulosechemtechnol.2024.58.90 The enzyme complex formate:hydrogen lyase (FHL) cleaves formate under acidic conditions into H2 and CO2.
  • molecular oxygen inhibits molecular hydrogen RO:0002212

    Oxygen prevents fermentative hydrogen generation.

    • DOI:10.35812/cellulosechemtechnol.2024.58.90 The presence of oxygen prevents the generation of hydrogen.
  • mixed-acid fermentation lowers cytoplasmic pH

    Acid generation by MAF lowers cytoplasmic pH.

    • DOI:10.1128/iai.00176-23 MAF results in the generation of acid, which subsequently lowers the pH of the cytoplasm.
  • pyruvate formate lyase (PflB) produces acetyl-CoA METPO:2000202

    Pyruvate formate-lyase cleaves pyruvate into acetyl-CoA and formate.

    • DOI:10.3389/fmicb.2021.703525 Connecting edge wiring the enrichment node into the graph.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.3389/fmicb.2021.703525

Parent traits (1)

kg-microbe context

Matched 1 kg-microbe node via parent_proxy.

  • METPO:1002005 [-0.758, -6.428, +3.551, +10.454, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · PROPOSED_FROM_RESEARCH · claude

    Proposed candidate METABOLISM trait (mixed-acid fermentation); product-specific sub-variant of the existing Fermentation class (METPO:1002005).

  2. · CURATED_CAUSAL_GRAPH · claude

    Added evidence-backed causal graph (mixed-acid fermentation) with GO node grounding and METPO/biolink predicate groundings; promoted PROPOSED to REVIEWED.

  3. · ENRICH_CAUSAL_GRAPH · claude

    Added 10 evidence-backed generic edges (12 new nodes) from the deep-research report.

  4. · FIX_ORPHAN_NODE · claude

    Connected orphaned node 'acetyl_coa' via pyruvate_formate_lyase -[produces]-> acetyl_coa.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 5 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×4, RO:0002212×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:16526×1, CHEBI:18276×1).

  7. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:15361×1).