Anaerobic respiration

METPO:1000802 · CLASS · REVIEWED

A respiration in which an organism uses electron acceptors other than oxygen for energy production.

Anaerobic respiration with nitrogen oxide acceptors

Evidence-backed causal sketch using denitrification as a representative anaerobic respiratory process.

Anaerobic respiration with nitrogen oxide acceptors Interactive directed graph showing evidence-backed causal relationships for Anaerobic respiration.

Edge evidence

  • denitrification occurs in anaerobic or microaerophilic condition biolink:occurs_in

    Denitrification can occur under anaerobic and microaerophilic conditions.

    • DOI:10.1128/mmbr.61.4.533-616.1997 under anaerobic, microaerophilic, and occasionally aerobic conditions Supports low-oxygen context for denitrification.
  • nitrogen oxides acts as terminal electron acceptor

    Nitrogen oxides serve as terminal electron acceptors.

    • DOI:10.1128/mmbr.61.4.533-616.1997 N oxides as terminal electron acceptors Supports the terminal electron acceptor role.
  • denitrification uses nitrogen oxides

    Denitrification uses nitrogen oxides in respiratory bioenergetics.

    • DOI:10.1128/mmbr.61.4.533-616.1997 making use of N oxides Supports nitrogen oxides as denitrification substrates.
  • denitrification conserves cellular energy conservation

    Denitrification is a respiratory route for energy conservation.

    • DOI:10.1128/mmbr.61.4.533-616.1997 distinct means of energy conservation Supports energy conservation via denitrification.
  • Anaerobic respiration exemplified by denitrification

    Denitrification is a representative anaerobic respiratory process.

    • DOI:10.1128/mmbr.61.4.533-616.1997 terminal electron acceptors for cellular bioenergetics Supports denitrification as non-oxygen respiratory bioenergetics.
  • oxygen limitation / anoxic transition increases activity of denitrification reductases

    Onset of anoxia drives early transcription and activity of denitrification reductases.

    • DOI:10.1038/s41467-024-51688-w early transcription of NAR (and sometimes NOS) at the cusp of anoxia; environmental driver activating denitrification reductases.
  • respiratory nitrate reductase (NarGHI) catalyzes reduction of nitrate

    Respiratory nitrate reductase NarGHI catalyzes the reduction of nitrate to nitrite.

    • DOI:10.1128/msystems.00967-23 the narGHI nitrate reductase cluster; NarGHI catalyzes nitrate reduction to nitrite, the canonical first step of nitrate respiration.
  • respiratory nitrate reductase (NarGHI) produces nitrite METPO:2000202

    Reduction of nitrate by NarGHI yields nitrite.

    • DOI:10.1128/msystems.00967-23 NarGHI nitrate reductase produces nitrite from nitrate.
  • nitrous oxide reductase (NosZ) reduces nitrous oxide METPO:2000017

    NosZ reduces nitrous oxide to dinitrogen, the terminal step of complete denitrification.

    • DOI:10.1128/msystems.00967-23 NosZ reduces N2O to N2; canonical terminal denitrification step.
  • nitrous oxide reductase (NosZ) produces dinitrogen METPO:2000202

    NosZ-catalyzed reduction of nitrous oxide produces dinitrogen.

    • DOI:10.1128/msystems.00967-23 NosZ reduces N2O to N2; produces dinitrogen as denitrification end product.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1128/mmbr.61.4.533-616.1997

Parent traits (1)

Synonyms (2)

  • Anoxic respiration RELATED_SYNONYM · metpo.owl
  • Dissimilatory respiration (non-O₂) RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000802 [-0.426, -1.069, -1.023, +1.207, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · ADDED_CAUSAL_GRAPH · codex

    Added DOI-backed causal graph for anaerobic respiration using denitrification and nitrogen oxide terminal electron acceptors.

  3. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007504×1).

  4. · RENAME_PREDICATE_LABELS · claude

    Renamed 1 causal-edge predicate label(s) to align with existing groundings: occurs under → occurs in ×1.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:occurs_in×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:35196×1).

  7. · ENRICH_CAUSAL_GRAPH · claude

    Added 5 evidence-backed generic edges (8 new nodes) from the deep-research report.

  8. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×2, METPO:2000017×1).

  9. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:17632×1).

  10. · GROUND_CAUSAL_NODES · claude

    Grounded 3 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:16301×1, CHEBI:17045×1, CHEBI:17997×1).