propionic acid fermentation

traitmech:000029 · CLASS · REVIEWED

A fermentation that produces propionate (with acetate and CO2) from sugars or lactate, typically via the Wood-Werkman (methylmalonyl-CoA) pathway. Characteristic of propionibacteria (e.g. Propionibacterium freudenreichii).

Propionic acid fermentation produces propionate via the Wood-Werkman pathway

Evidence-backed causal sketch linking methylmalonyl-CoA-pathway catabolism of sugars or lactate to propionate, acetate, and CO2.

Propionic acid fermentation produces propionate via the Wood-Werkman pathway Interactive directed graph showing evidence-backed causal relationships for propionic acid fermentation.

Edge evidence

  • propionic acid fermentation participates in fermentation biolink:participates_in

    Propionic acid fermentation is a class of fermentation metabolism.

    • DOI:10.3389/fmicb.2021.703525 Energy-conservation review supports propionate formation as a redox-balancing fermentation route.
  • propionic acid fermentation produces propionate METPO:2000202

    Propionate is the characteristic end product of the pathway.

    • DOI:10.3390/molecules31020333 Classical-fermentation review describes propionic acid fermentation via the Wood-Werkman pathway in propionibacteria.
  • propionic acid fermentation has major pathway Wood-Werkman cycle

    The Wood-Werkman methylmalonyl-CoA cycle is the predominant propionate-forming route.

    • DOI:10.3390/molecules31020333 Wood-Werkman cycle described as the predominant propionate-forming route in Propionibacterium and Acidipropionibacterium.
  • pyruvate causally upstream of oxaloacetate

    Pyruvate is carboxylated to oxaloacetate in a biotin-dependent reaction.

    • DOI:10.3390/molecules31020333 Pyruvate is carboxylated to oxaloacetate by methylmalonyl-CoA carboxytransferase in a biotin-dependent reaction.
  • biotin cofactor for methylmalonyl-CoA carboxytransferase

    The transcarboxylation step is biotin-dependent.

    • DOI:10.3390/molecules31020333 The transcarboxylation converting pyruvate to oxaloacetate is explicitly described as biotin-dependent.
  • oxaloacetate causally upstream of malate

    Oxaloacetate is reduced to malate in the reductive branch.

    • DOI:10.3390/molecules31020333 Oxaloacetate is reduced to malate in the reductive branch leading toward succinate.
  • malate causally upstream of fumarate

    Malate is dehydrated to fumarate.

    • DOI:10.3390/molecules31020333 Malate is dehydrated to fumarate in the Wood-Werkman route.
  • fumarate causally upstream of succinate

    Fumarate is reduced to succinate.

    • DOI:10.3390/molecules31020333 Fumarate is reduced to succinate en route to propionate formation.
  • succinyl-CoA causally upstream of methylmalonyl-CoA

    The pathway proceeds through succinyl-CoA and methylmalonyl-CoA intermediates.

    • DOI:10.3390/molecules31020333 The pathway proceeds through succinyl-CoA and methylmalonyl-CoA intermediates during propionate formation.
  • propionyl-CoA causally upstream of propionate

    Propionyl-CoA is converted to propionate by a CoA-transferase.

    • DOI:10.3390/molecules31020333 Propionyl-CoA is finally converted to propionic acid or propionate by a CoA-transferase.
  • propionic acid fermentation has byproduct acetate

    The fermentation produces propionate with acetate as a co-product.

    • DOI:10.3390/molecules31020333 The fermentation is defined as producing propionic acid with acetate as a co-product.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.3390/molecules31020333

Parent traits (1)

Synonyms (1)

  • propionate fermentation RELATED_SYNONYM · DOI:10.3390/molecules31020333

kg-microbe context

Matched 1 kg-microbe node via parent_proxy.

  • METPO:1002005 [-0.758, -6.428, +3.551, +10.454, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · PROPOSED_FROM_RESEARCH · claude

    Proposed candidate METABOLISM trait (propionic acid fermentation); product-specific sub-variant of the existing Fermentation class (METPO:1002005).

  2. · CURATED_CAUSAL_GRAPH · claude

    Added evidence-backed causal graph (propionic acid fermentation) with GO node grounding and METPO/biolink predicate groundings; promoted PROPOSED to REVIEWED.

  3. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:17272×1).

  4. · ENRICH_CAUSAL_GRAPH · claude

    Added 9 evidence-backed generic edges (12 new nodes) from the deep-research report.

  5. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:29806×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 3 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:15361×1, CHEBI:16452×1, CHEBI:15539×1).

  7. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A3S9JES8×1).