habitat association
traitmech:000047 · CLASS · REVIEWED
An ecological classification of the primary environment or niche an organism inhabits (e.g. free-living vs host-associated; soil, rhizosphere, gut). Microbial taxa show biogeographic structure across such habitats.
Habitat association structures microbial biogeography
Edge evidence
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habitat
causes
habitat association
biolink:causesThe organism's primary habitat sets its habitat-association classification.
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DOI:10.1038/nrmicro1341
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habitat association
associated with
biogeographic community structure
biolink:associated_withHabitat-associated taxa display environment-specific community membership.
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DOI:10.1038/nrmicro.2017.87
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habitat
structures
microbial community composition
The habitat/environment selects for spatial variation in community composition.
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DOI:10.1038/nrmicro1341
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environmental stress
increases
deterministic selection in community assembly
RO:0002213Higher environmental stress increases the contribution of deterministic selection to assembly.
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DOI:10.1038/s41564-023-01573-x
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environmental stress
decreases
ecological drift in community assembly
RO:0002212Higher environmental stress decreases the contribution of stochastic drift to assembly.
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DOI:10.1038/s41564-023-01573-x
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environmental stress
decreases
dispersal limitation in community assembly
RO:0002212Higher environmental stress decreases the contribution of dispersal limitation to assembly.
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DOI:10.1038/s41564-023-01573-x
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salinity
structures
microbial community composition
Salinity is a primary abiotic regulator of aquatic community composition.
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DOI:10.1186/s40168-024-01979-7
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salinity
enriches
osmolyte transport and synthesis genes
Saline habitats enrich for osmolyte transport and synthesis genes.
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DOI:10.1186/s40168-024-01979-7
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1038/nrmicro1341
Parent traits (1)
Children (4)
Synonyms (1)
- niche association
kg-microbe context
Matched 1 kg-microbe node via parent_proxy.
METPO:1000059[-2.682, -2.070, -3.656, -0.652, …]
Nearest neighbors in embedding space
- environment cadmium tolerant 1.000
- morphology sulfur globule 1.000
- environment cobalt tolerant 1.000
- environment copper tolerant 1.000
- environment desiccation tolerant 1.000
- environment piezophilic 1.000
- environment obligately piezophilic 1.000
- morphology gas vesicle 1.000
Curation history
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PROPOSED_FROM_RESEARCH · claude
Proposed candidate ECOLOGY axis class (habitat association) to parent the free-living/host-associated/soil/rhizosphere/gut habitat sub-variants.
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CURATED_CAUSAL_GRAPH · claude
Added evidence-backed causal graph (habitat / biogeographic structure) with biolink predicate groundings; promoted PROPOSED to REVIEWED.
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (ENVO:01000739×1).
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ENRICH_CAUSAL_GRAPH · claude
Added 6 evidence-backed generic edges (7 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002212×2, RO:0002213×1).