pressure optimum

traitmech:000004 · CLASS · REVIEWED

A pressure phenotype with numerical limits giving the hydrostatic pressure at which an organism grows fastest.

Pressure-optimum balanced adaptation

Evidence-backed sketch linking the hydrostatic-pressure axis to the organism-specific pressure at which growth rate is maximal.

Pressure-optimum balanced adaptation Interactive directed graph showing evidence-backed causal relationships for pressure optimum.

Edge evidence

  • hydrostatic pressure defines pressure optimum METPO:2007500

    The hydrostatic-pressure axis defines the value at which growth is fastest.

    • DOI:10.3389/fmolb.2022.1058381 Pressure-adaptation review supports an organism-specific optimal growth pressure as the defining piezophile quantity.
  • pressure optimum associated with maximal growth rate biolink:associated_with

    The optimum pressure marks the peak of the pressure-versus-growth curve.

    • DOI:10.1099/ijsem.0.001671 Colwellia marinimaniae MTCD1 illustrates a measurable pressure optimum (120 MPa).
  • membrane unsaturated fatty acids enables pressure optimum RO:0002327

    Increased membrane unsaturated/PUFA content enables growth at elevated hydrostatic pressure, shaping the pressure optimum.

    • DOI:10.3389/fmolb.2022.1058381 Review: abundance of membrane lipids with unsaturated and branched-chain fatty acids rises with increasing HHP.
  • intracellular cation concentration increases intracellular osmotic pressure RO:0002213

    Increased cation import raises intracellular osmotic pressure.

    • DOI:10.1128/mbio.00958-23 Authors propose increased cation import to raise intracellular osmotic pressure under HHP.
  • intracellular osmotic pressure enables high hydrostatic pressure tolerance RO:0002327

    Elevated intracellular osmotic pressure enables high hydrostatic pressure tolerance.

    • DOI:10.1128/mbio.00958-23 Proposed HHP-tolerance model: importing cations to raise intracellular osmotic pressure.
  • compatible solute accumulation promotes protein stabilization by preferential hydration RO:0002213

    Compatible solutes (piezolytes) stabilize proteins by preferential hydration.

    • DOI:10.3390/microorganisms11071629 Compatible solutes displace water bound to proteins via preferential hydration; glutamate/betaine/beta-hydroxybutyrate detected at 20-30 MPa.
  • compatible solute accumulation enables high hydrostatic pressure tolerance RO:0002327

    Compatible-solute (piezolyte) accumulation enables pressure tolerance.

    • DOI:10.1007/s00253-023-12906-5 Osmolyte-based protection (proline, glutamate, betaine, beta-hydroxybutyrate, TMAO) supports pressure tolerance across taxa.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1099/ijsem.0.001671

Parent traits (1)

kg-microbe context

Matched 1 kg-microbe node via parent_proxy.

  • METPO:1000059 [-2.682, -2.070, -3.656, -0.652, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · PROPOSED_FROM_RESEARCH · claude

    Proposed quantitative companion trait (optimal growth pressure) mirroring the existing temperature_optimum / nacl_optimum pattern, to fill the pressure coverage gap.

  2. · CURATED_CAUSAL_GRAPH · claude

    Added evidence-backed causal graph (pressure-axis defines optimum) with METPO/biolink predicate groundings; promoted PROPOSED to REVIEWED.

  3. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (PATO:0001025×1).

  4. · ENRICH_CAUSAL_GRAPH · claude

    Added 5 evidence-backed generic edges (6 new nodes) from the deep-research report.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 5 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×3, RO:0002213×2).