spore germination
traitmech:000083 · CLASS · REVIEWED
The physiological process by which a dormant spore exits dormancy and resumes vegetative growth in response to germinant signals, including release of dipicolinic acid and rehydration of the spore core.
Germinant-triggered spore germination
Edge evidence
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germinant
causes
spore germination
biolink:causesGerminant binding triggers the germination process.
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DOI:10.1016/j.mib.2003.10.001
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spore germination
enables
spore germination
RO:0002327The germination process realizes the spore-germination trait.
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DOI:10.1038/nrmicro2504
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spore germination
causes
CaDPA release from spore core
biolink:causesThe germination process drives SpoVA-mediated release of calcium dipicolinate from the spore core.
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DOI:10.1126/science.adg9829
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CaDPA release from spore core
activates
cortex peptidoglycan hydrolysis
RO:0002213Released CaDPA acts as a signal activating germination-specific cortex-lytic enzymes to begin cortex degradation.
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DOI:10.1128/mbio.02220-23
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cortex peptidoglycan hydrolysis
causes
core rehydration and outgrowth
biolink:causesOnce the cortex is hydrolyzed, the core can fully expand and rehydrate, enabling outgrowth.
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DOI:10.1128/mbio.02220-23
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core rehydration and outgrowth
enables
spore germination
RO:0002327Core rehydration and outgrowth complete realization of the spore-germination trait.
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DOI:10.1128/mbio.02220-23
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1016/j.mib.2003.10.001
Parent traits (1)
Synonyms (1)
- germination
kg-microbe context
Matched 1 kg-microbe node via parent_proxy.
METPO:1000059[-2.682, -2.070, -3.656, -0.652, …]
Nearest neighbors in embedding space
- environment cadmium tolerant 1.000
- morphology sulfur globule 1.000
- environment cobalt tolerant 1.000
- environment copper tolerant 1.000
- environment desiccation tolerant 1.000
- environment piezophilic 1.000
- environment obligately piezophilic 1.000
- morphology gas vesicle 1.000
Curation history
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PROPOSED_FROM_RESEARCH · claude
Proposed candidate PHYSIOLOGY trait (spore germination), the physiological exit from spore dormancy; complements the morphological sporulation/spore-forming traits.
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CURATED_CAUSAL_GRAPH · claude
Added evidence-backed causal graph (germinant-triggered germination) with GO node grounding and biolink/RO predicate groundings; promoted PROPOSED to REVIEWED.
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ENRICH_CAUSAL_GRAPH · claude
Added 4 evidence-backed generic edges (3 new nodes) from the deep-research report, extending the downstream germination cascade (CaDPA release -> cortex hydrolysis -> core rehydration/outgrowth -> trait).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 4 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×2, RO:0002213×1, RO:0002327×1).