viable but nonculturable state
traitmech:000081 · CLASS · REVIEWED
A dormancy state in which cells remain viable and minimally metabolically active but lose the ability to grow on routine culture media, regaining culturability upon resuscitation.
Stress-induced viable-but-nonculturable state
Edge evidence
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environmental stress
causes
viable but nonculturable state
biolink:causesStress drives cells into the viable-but-nonculturable state.
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DOI:10.1111/j.1574-6976.2009.00200.x
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dormancy process
enables
viable but nonculturable state
RO:0002327The VBNC state is a form of microbial dormancy.
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DOI:10.1038/nrmicro2504
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oxidative stress / ROS accumulation
promotes
viable but nonculturable state
RO:0002213Oxidative stress / ROS accumulation promotes entry into the VBNC state.
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DOI:10.3390/foods12061179
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(p)ppGpp
enhances
stress resistance
(p)ppGpp accumulation enhances stress resistance during VBNC.
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DOI:10.3390/foods12061179
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stress resistance
contributes to
viable but nonculturable state
RO:0002326Enhanced stress resistance supports maintenance of the VBNC state.
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DOI:10.3390/foods12061179
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RpoS sigma factor
required for
resuscitation from VBNC
RpoS is required for resuscitation from the VBNC state.
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DOI:10.3390/microorganisms12010039
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ATP
promotes
resuscitation from VBNC
RO:0002213ATP availability promotes resuscitation efficiency from VBNC.
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DOI:10.1016/j.jare.2023.08.002
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ATP
drives
NAD+ biosynthesis
Residual ATP drives NAD+ synthesis during the resuscitating lag phase.
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DOI:10.1016/j.jare.2023.08.002
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NAD+ biosynthesis
restores
TCA cycle flux and oxidative phosphorylation
NAD+ synthesis restores TCA cycle flux and oxidative phosphorylation during resuscitation.
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DOI:10.1016/j.jare.2023.08.002
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1111/j.1574-6976.2009.00200.x
Parent traits (1)
Synonyms (1)
- VBNC state
kg-microbe context
Matched 1 kg-microbe node via parent_proxy.
METPO:1000059[-2.682, -2.070, -3.656, -0.652, …]
Nearest neighbors in embedding space
- environment cadmium tolerant 1.000
- morphology sulfur globule 1.000
- environment cobalt tolerant 1.000
- environment copper tolerant 1.000
- environment desiccation tolerant 1.000
- environment piezophilic 1.000
- environment obligately piezophilic 1.000
- morphology gas vesicle 1.000
Curation history
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PROPOSED_FROM_RESEARCH · claude
Proposed candidate PHYSIOLOGY trait (viable but nonculturable state); sub-variant of dormancy.
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CURATED_CAUSAL_GRAPH · claude
Added evidence-backed causal graph (stress-induced VBNC) with GO node grounding and biolink/RO predicate groundings; promoted PROPOSED to REVIEWED.
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ENRICH_CAUSAL_GRAPH · claude
Added 7 evidence-backed generic edges (8 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002213×2, RO:0002326×1).