viable but nonculturable state

traitmech:000081 · CLASS · REVIEWED

A dormancy state in which cells remain viable and minimally metabolically active but lose the ability to grow on routine culture media, regaining culturability upon resuscitation.

Stress-induced viable-but-nonculturable state

Evidence-backed causal sketch linking stress to a dormant viable-but-nonculturable state that resuscitates later.

Stress-induced viable-but-nonculturable state Interactive directed graph showing evidence-backed causal relationships for viable but nonculturable state.

Edge evidence

  • environmental stress causes viable but nonculturable state biolink:causes

    Stress drives cells into the viable-but-nonculturable state.

    • DOI:10.1111/j.1574-6976.2009.00200.x Oliver reviews stress-induced entry into the VBNC state.
  • dormancy process enables viable but nonculturable state RO:0002327

    The VBNC state is a form of microbial dormancy.

    • DOI:10.1038/nrmicro2504 Lennon & Jones frame VBNC within microbial dormancy.
  • oxidative stress / ROS accumulation promotes viable but nonculturable state RO:0002213

    Oxidative stress / ROS accumulation promotes entry into the VBNC state.

    • DOI:10.3390/foods12061179 Oxidative stress is a major trigger: ROS increase during VBNC entry (review across foodborne pathogens, mechanistically broad).
  • (p)ppGpp enhances stress resistance

    (p)ppGpp accumulation enhances stress resistance during VBNC.

    • DOI:10.3390/foods12061179 Accumulation of (p)ppGpp, enhancing stress resistance, supports the regulatory layer upstream of VBNC maintenance.
  • stress resistance contributes to viable but nonculturable state RO:0002326

    Enhanced stress resistance supports maintenance of the VBNC state.

    • DOI:10.3390/foods12061179 Stress resistance enhanced via (p)ppGpp underlies persistence in the VBNC state.
  • RpoS sigma factor required for resuscitation from VBNC

    RpoS is required for resuscitation from the VBNC state.

    • DOI:10.3390/microorganisms12010039 RpoS is expressed in VBNC cells and required for resuscitation; RpoS mutants fail to resuscitate.
  • ATP promotes resuscitation from VBNC RO:0002213

    ATP availability promotes resuscitation efficiency from VBNC.

    • DOI:10.1016/j.jare.2023.08.002 Higher ATP levels correlated with higher resuscitation efficiency.
  • ATP drives NAD+ biosynthesis

    Residual ATP drives NAD+ synthesis during the resuscitating lag phase.

    • DOI:10.1016/j.jare.2023.08.002 Part of cellular ATP is consumed during the lag phase to synthesize NAD+.
  • NAD+ biosynthesis restores TCA cycle flux and oxidative phosphorylation

    NAD+ synthesis restores TCA cycle flux and oxidative phosphorylation during resuscitation.

    • DOI:10.1016/j.jare.2023.08.002 ATP-mediated NAD+ synthesis increases NAD+ availability, restoring TCA cycle flux and driving oxidative phosphorylation.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1111/j.1574-6976.2009.00200.x

Parent traits (1)

Synonyms (1)

  • VBNC state RELATED_SYNONYM · DOI:10.1111/j.1574-6976.2009.00200.x

kg-microbe context

Matched 1 kg-microbe node via parent_proxy.

  • METPO:1000059 [-2.682, -2.070, -3.656, -0.652, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · PROPOSED_FROM_RESEARCH · claude

    Proposed candidate PHYSIOLOGY trait (viable but nonculturable state); sub-variant of dormancy.

  2. · CURATED_CAUSAL_GRAPH · claude

    Added evidence-backed causal graph (stress-induced VBNC) with GO node grounding and biolink/RO predicate groundings; promoted PROPOSED to REVIEWED.

  3. · ENRICH_CAUSAL_GRAPH · claude

    Added 7 evidence-backed generic edges (8 new nodes) from the deep-research report.

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002213×2, RO:0002326×1).