strictly anaerobic

METPO:1000611 · CLASS · REVIEWED

An obligately anaerobic oxygen preference in which a microorganism does not grow in the presence of oxygen gas (O₂).

Strict anaerobe oxygen-sensitivity mechanism

Evidence-backed causal sketch linking strict anaerobic growth to anoxic environments and oxygen-sensitive cellular chemistry.

Strict anaerobe oxygen-sensitivity mechanism Interactive directed graph showing evidence-backed causal relationships for strictly anaerobic.

Edge evidence

  • anoxic condition enables strictly anaerobic RO:0002327

    Strict anaerobes require oxygen-excluding conditions for growth.

    • DOI:10.1038/s41579-021-00583-y hypoxic or anoxic conditions Review supports anoxic environments as the ecological context for anaerobe growth.
  • molecular oxygen inhibits strictly anaerobic RO:0002212

    Oxygen exposure blocks strict anaerobic growth.

    • DOI:10.1038/s41579-021-00583-y oxygen blocks their growth Supports oxygen as an inhibitory exposure for obligate anaerobes.
  • molecular oxygen causes formation of reactive oxygen species biolink:produces

    Oxygen exposure can generate reactive oxygen stress.

    • DOI:10.1038/s41579-021-00583-y molecular oxygen and ROS Review links oxygen exposure to ROS stress in anaerobes.
  • reactive oxygen species damages oxygen-sensitive enzymes

    ROS can impair oxygen-sensitive anaerobic enzyme systems.

    • DOI:10.1038/s41579-021-00583-y poisoning by molecular oxygen and ROS Supports enzyme vulnerability as a mechanism of oxygen toxicity.
  • molecular oxygen oxidizes/inactivates iron-sulfur cluster enzymes

    Oxygen directly oxidizes mononuclear iron enzymes and solvent-exposed iron-sulfur clusters.

    • DOI:10.1128/iai.00502-24 "oxygen directly oxidizes mononuclear iron enzymes and solvent-exposed iron-sulfur clusters" - general oxygen toxicity mechanism across anaerobes.
  • molecular oxygen inactivates glycyl radical enzymes

    Glycyl radical enzymes are inherently incompatible with molecular oxygen.

    • DOI:10.1128/iai.00502-24 "Certain enzyme classes (e.g., glycyl radical enzymes) are inherently incompatible with molecular oxygen" - broad across taxa.
  • molecular oxygen inactivates low-potential energy-metabolism enzymes (PFOR/PFL)

    Key anaerobic energy-metabolism enzymes (PFOR, PFL) with low-potential Fe-S clusters are oxygen sensitive.

    • DOI:10.1038/s43705-023-00251-7 "key enzymes involved in energy metabolism in anaerobes such as pyruvate ferrodoxin oxidoreductase (PFOR), pyruvate formate lyase (PFL)... are known to be O2 sensitive" - general anaerobe biology.

Provenance

Source
METPO (2025-11-25)
Definition source
https://www.ncbi.nlm.nih.gov/books/NBK482349/

Synonyms (1)

  • strict obligate anaerobe RELATED_SYNONYM · https://www.ncbi.nlm.nih.gov/books/NBK482349/

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000611 [-2.094, -2.231, -3.010, +0.611, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_WITH_LITERATURE · codex

    Clarified wording, added definition source, synonym, and evidence.

  3. · ADDED_ORGANISM_EXAMPLE · codex

    Added Clostridioides difficile organism example with PMID-backed evidence.

  4. · ADDED_CAUSAL_GRAPH · codex

    Added DOI-backed causal graph for strict anaerobe oxygen sensitivity.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (ENVO:01001057×1).

  7. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002212×1, biolink:produces×1).

  8. · FIX_NODE_GROUNDING_CURIE · claude

    Overwrote 1 causal-node grounding(s) to corrected CURIEs (phase-2 id-label fix; verified vs OAK).

  9. · REMOVE_REDUNDANT_SYNONYM · claude

    Removed 1 synonym(s) whose text duplicated the label (seeder redundancy; no information lost).

  10. · ENRICH_CAUSAL_GRAPH · claude

    Added 3 evidence-backed generic edges (3 new nodes) from the deep-research report.