strictly anaerobic
METPO:1000611 · CLASS · REVIEWED
An obligately anaerobic oxygen preference in which a microorganism does not grow in the presence of oxygen gas (O₂).
Strict anaerobe oxygen-sensitivity mechanism
Edge evidence
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anoxic condition
enables
strictly anaerobic
RO:0002327Strict anaerobes require oxygen-excluding conditions for growth.
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DOI:10.1038/s41579-021-00583-yhypoxic or anoxic conditions
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molecular oxygen
inhibits
strictly anaerobic
RO:0002212Oxygen exposure blocks strict anaerobic growth.
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DOI:10.1038/s41579-021-00583-yoxygen blocks their growth
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molecular oxygen
causes formation of
reactive oxygen species
biolink:producesOxygen exposure can generate reactive oxygen stress.
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DOI:10.1038/s41579-021-00583-ymolecular oxygen and ROS
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reactive oxygen species
damages
oxygen-sensitive enzymes
ROS can impair oxygen-sensitive anaerobic enzyme systems.
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DOI:10.1038/s41579-021-00583-ypoisoning by molecular oxygen and ROS
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molecular oxygen
oxidizes/inactivates
iron-sulfur cluster enzymes
Oxygen directly oxidizes mononuclear iron enzymes and solvent-exposed iron-sulfur clusters.
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DOI:10.1128/iai.00502-24
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molecular oxygen
inactivates
glycyl radical enzymes
Glycyl radical enzymes are inherently incompatible with molecular oxygen.
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DOI:10.1128/iai.00502-24
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molecular oxygen
inactivates
low-potential energy-metabolism enzymes (PFOR/PFL)
Key anaerobic energy-metabolism enzymes (PFOR, PFL) with low-potential Fe-S clusters are oxygen sensitive.
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DOI:10.1038/s43705-023-00251-7
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- https://www.ncbi.nlm.nih.gov/books/NBK482349/
Parent traits (1)
Synonyms (1)
- strict obligate anaerobe
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000611[-2.094, -2.231, -3.010, +0.611, …]
Nearest neighbors in embedding space
- environment obligately anaerobic 0.679
- morphology cell width 0.307
- morphology cell length 0.303
- environment oxygen preference 0.296
- morphology motility 0.291
- physiology heterotrophic 0.283
- environment hyperthermophilic 0.280
- physiology mixotrophic 0.277
Curation history
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SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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CURATED_WITH_LITERATURE · codex
Clarified wording, added definition source, synonym, and evidence.
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ADDED_ORGANISM_EXAMPLE · codex
Added Clostridioides difficile organism example with PMID-backed evidence.
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ADDED_CAUSAL_GRAPH · codex
Added DOI-backed causal graph for strict anaerobe oxygen sensitivity.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (ENVO:01001057×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002212×1, biolink:produces×1).
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FIX_NODE_GROUNDING_CURIE · claude
Overwrote 1 causal-node grounding(s) to corrected CURIEs (phase-2 id-label fix; verified vs OAK).
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REMOVE_REDUNDANT_SYNONYM · claude
Removed 1 synonym(s) whose text duplicated the label (seeder redundancy; no information lost).
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ENRICH_CAUSAL_GRAPH · claude
Added 3 evidence-backed generic edges (3 new nodes) from the deep-research report.