chemotrophic

METPO:1000641 · CLASS · REVIEWED

A trophic type in which an organism obtains energy from chemical oxidation of either inorganic or organic compounds.

Chemotrophic chemical redox energy conservation

DOI-backed graph linking reduced chemical substrates, inorganic and organic donor examples, redox reactions, respiratory electron transfer, proton motive force, and ATP.

Chemotrophic chemical redox energy conservation Interactive directed graph showing evidence-backed causal relationships for chemotrophic.

Edge evidence

  • chemotrophic uses energy source reduced chemical substrate METPO:2000010

    Chemotrophy uses chemical substrates as energy sources.

    • DOI:10.1016/B978-012373944-5.00083-3 chemical energy Supports chemical energy as the defining chemotrophic energy source.
  • inorganic compound example of reduced chemical substrate rdfs:subClassOf

    Inorganic substrates are chemical energy sources in lithotrophy.

    • DOI:10.1016/B978-0-12-378630-2.00219-X oxidize inorganic atoms or molecules Supports inorganic chemical substrates in chemolithotrophic metabolism.
  • organic compound example of reduced chemical substrate rdfs:subClassOf

    Organic substrates are chemical energy sources in organotrophy.

    • DOI:10.1016/B978-012373944-5.00083-3 reduced organic compound Supports reduced organic compounds as chemical energy substrates.
  • reduced chemical substrate oxidized by redox reaction

    Chemical energy is released through oxidation-reduction chemistry.

    • DOI:10.1016/j.bbabio.2008.09.008 free energy of a redox reaction Supports redox reactions as the energy source for chemiosmotic conservation.
  • redox reaction feeds electrons into respiratory chain METPO:2007402

    Redox reactions can feed electrons into membrane respiratory chains.

    • DOI:10.1016/j.bbabio.2008.09.008 membrane-bound electron transport chain Supports membrane electron transport in respiratory energy conservation.
  • respiratory chain transfers electrons to terminal electron acceptor METPO:2007403

    Respiratory chains transfer electrons to terminal acceptors.

    • DOI:10.1128/mmbr.61.4.533-616.1997 terminal electron acceptor Supports terminal electron acceptors in respiratory metabolism.
  • respiratory chain generates proton motive force biolink:produces

    Respiratory electron transfer generates an ion gradient.

    • DOI:10.1016/j.bbabio.2008.09.008 generation of an electrochemical ion gradient Supports ion-gradient formation by electron transport.
  • proton motive force drives production of ATP biolink:produces

    Proton motive force drives ATP synthesis.

    • DOI:10.1016/j.bbabio.2008.09.008 drives ATP synthesis Supports ATP synthesis from chemotrophic respiratory energy conservation.
  • proton motive force can be built by quinone/quinol cycling

    Proton motive force can be generated by quinone/quinol cycling.

    • DOI:10.1016/j.bbabio.2008.09.008 The proton motive force (pmf) can be built up by different mechanisms like proton pumping, quinone/quinol cycling or by a redox loop.
  • proton pumping contributes to generation of proton motive force

    Active proton pumping contributes to building the proton motive force.

    • DOI:10.1016/j.bbabio.2008.09.008 The proton motive force (pmf) can be built up by different mechanisms like proton pumping, quinone/quinol cycling or by a redox loop.
  • redox loop contributes to generation of proton motive force

    A redox loop contributes to building the proton motive force.

    • DOI:10.1016/j.bbabio.2008.09.008 The proton motive force (pmf) can be built up by different mechanisms like proton pumping, quinone/quinol cycling or by a redox loop.
  • redox loop couples electron transport to net proton transfer across membrane

    A redox loop couples electron transport to net proton transfer across the membrane without proton pumping.

    • DOI:10.1016/j.bbabio.2008.09.008 The latter couples electron transport to a net proton transfer across the membrane without proton pumping.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1016/B978-012373944-5.00083-3

Parent traits (1)

Synonyms (2)

  • TT_chemotroph RELATED_SYNONYM · metpo.owl
  • chemotroph RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000641 [-1.746, -0.197, -4.063, +1.592, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · ADDED_CAUSAL_GRAPH · codex

    Added DOI-backed causal graph for chemical substrate oxidation, respiratory electron transfer, proton motive force, and ATP synthesis.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000010×1).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (rdfs:subClassOf×2, biolink:produces×1).

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007402×1, METPO:2007403×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0016491×1, GO:0022904×1).

  7. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007504×1, METPO:1007500×1).

  8. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:50860×1).

  9. · RETYPE_CAUSAL_NODES · claude

    Re-typed 1 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: proton motive force: BIOLOGICAL_PROCESS → STATE ×1.

  10. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:produces×1).

  11. · ENRICH_CAUSAL_GRAPH · claude

    Added 4 evidence-backed generic edges (4 new nodes) from the deep-research report.