chemotrophic
METPO:1000641 · CLASS · REVIEWED
A trophic type in which an organism obtains energy from chemical oxidation of either inorganic or organic compounds.
Chemotrophic chemical redox energy conservation
Edge evidence
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chemotrophic
uses energy source
reduced chemical substrate
METPO:2000010Chemotrophy uses chemical substrates as energy sources.
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DOI:10.1016/B978-012373944-5.00083-3chemical energy
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inorganic compound
example of
reduced chemical substrate
rdfs:subClassOfInorganic substrates are chemical energy sources in lithotrophy.
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DOI:10.1016/B978-0-12-378630-2.00219-Xoxidize inorganic atoms or molecules
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organic compound
example of
reduced chemical substrate
rdfs:subClassOfOrganic substrates are chemical energy sources in organotrophy.
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DOI:10.1016/B978-012373944-5.00083-3reduced organic compound
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reduced chemical substrate
oxidized by
redox reaction
Chemical energy is released through oxidation-reduction chemistry.
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DOI:10.1016/j.bbabio.2008.09.008free energy of a redox reaction
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redox reaction
feeds electrons into
respiratory chain
METPO:2007402Redox reactions can feed electrons into membrane respiratory chains.
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DOI:10.1016/j.bbabio.2008.09.008membrane-bound electron transport chain
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respiratory chain
transfers electrons to
terminal electron acceptor
METPO:2007403Respiratory chains transfer electrons to terminal acceptors.
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DOI:10.1128/mmbr.61.4.533-616.1997terminal electron acceptor
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respiratory chain
generates
proton motive force
biolink:producesRespiratory electron transfer generates an ion gradient.
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DOI:10.1016/j.bbabio.2008.09.008generation of an electrochemical ion gradient
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proton motive force
drives production of
ATP
biolink:producesProton motive force drives ATP synthesis.
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DOI:10.1016/j.bbabio.2008.09.008drives ATP synthesis
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proton motive force
can be built by
quinone/quinol cycling
Proton motive force can be generated by quinone/quinol cycling.
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DOI:10.1016/j.bbabio.2008.09.008
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proton pumping
contributes to generation of
proton motive force
Active proton pumping contributes to building the proton motive force.
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DOI:10.1016/j.bbabio.2008.09.008
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redox loop
contributes to generation of
proton motive force
A redox loop contributes to building the proton motive force.
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DOI:10.1016/j.bbabio.2008.09.008
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redox loop
couples electron transport to
net proton transfer across membrane
A redox loop couples electron transport to net proton transfer across the membrane without proton pumping.
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DOI:10.1016/j.bbabio.2008.09.008
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1016/B978-012373944-5.00083-3
Parent traits (1)
Synonyms (2)
- TT_chemotroph
- chemotroph
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000641[-1.746, -0.197, -4.063, +1.592, …]
Nearest neighbors in embedding space
- physiology organotrophic 0.838
- physiology lithotrophic 0.527
- physiology chemoorganotrophic 0.506
- environment NaCl delta low 0.426
- physiology trophic type 0.415
- morphology orange pigmented 0.410
- environment pH range mid2 0.408
- environment temperature delta mid2 0.407
Curation history
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SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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ADDED_CAUSAL_GRAPH · codex
Added DOI-backed causal graph for chemical substrate oxidation, respiratory electron transfer, proton motive force, and ATP synthesis.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000010×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (rdfs:subClassOf×2, biolink:produces×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007402×1, METPO:2007403×1).
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GROUND_CAUSAL_NODES · claude
Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0016491×1, GO:0022904×1).
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GROUND_CAUSAL_NODES · claude
Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007504×1, METPO:1007500×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:50860×1).
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RETYPE_CAUSAL_NODES · claude
Re-typed 1 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: proton motive force: BIOLOGICAL_PROCESS → STATE ×1.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:produces×1).
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ENRICH_CAUSAL_GRAPH · claude
Added 4 evidence-backed generic edges (4 new nodes) from the deep-research report.