oxidative stress response

traitmech:000079 · CLASS · REVIEWED

A stress response that defends the cell against reactive oxygen species (e.g. superoxide and hydrogen peroxide) through detoxifying enzymes, regulators, and damage-repair systems.

Defense against reactive oxygen species

Evidence-backed causal sketch linking reactive oxygen species to an induced oxidative-stress defense.

Defense against reactive oxygen species Interactive directed graph showing evidence-backed causal relationships for oxidative stress response.

Edge evidence

  • hydrogen peroxide causes response to oxidative stress biolink:causes

    Reactive oxygen species trigger the oxidative-stress response.

    • DOI:10.1038/nrmicro3032 Imlay reviews ROS damage and induced defenses.
  • response to oxidative stress enables oxidative stress response RO:0002327

    The induced defense realizes the oxidative-stress-response trait.

    • DOI:10.1007/s00018-003-3206-5 Chelikani et al. support catalases as core oxidative-stress enzymes.
  • OxyR transcriptional regulator positively regulates response to oxidative stress

    OxyR activates transcription of genes that defend the cell against oxidative stress.

    • DOI:10.1099/mic.0.001481 OxyR is widely conserved in bacteria and activates transcription of a set of genes that influence cellular defence against oxidative stress.
  • RpoS (sigma-S) general stress sigma factor positively regulates response to oxidative stress

    The general stress sigma factor RpoS controls oxidative-stress defense outputs; its loss increases sensitivity to oxidative stress.

    • DOI:10.1128/mmbr.00151-22 Cells devoid of RpoS are sensitive to oxidative stress; the RpoS regulon includes oxidative-stress genes (dps, catalases, sodA, osmC).
  • thioredoxin system contributes to response to oxidative stress RO:0002326

    Thioredoxin thiol-repair systems support survival under oxidative/oxidant stress, including in anaerobes and spores.

    • DOI:10.1371/journal.ppat.1012001 Multiple thioredoxin systems are involved in the response to oxidative stresses, broadening thiol-repair scope beyond classic aerobes.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1038/nrmicro3032

kg-microbe context

Matched 1 kg-microbe node via parent_proxy.

  • METPO:1000059 [-2.682, -2.070, -3.656, -0.652, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · PROPOSED_FROM_RESEARCH · claude

    Proposed candidate PHYSIOLOGY trait (oxidative stress response); sub-variant of stress response.

  2. · CURATED_CAUSAL_GRAPH · claude

    Added evidence-backed causal graph (ROS defense) with GO/CHEBI node groundings and biolink/RO predicate groundings; promoted PROPOSED to REVIEWED.

  3. · ENRICH_CAUSAL_GRAPH · claude

    Added 3 evidence-backed generic edges (3 new nodes) from the deep-research report.

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002326×1).