photoautotrophic
METPO:1000656 · CLASS · REVIEWED
A trophic type characterized by the use of light as the energy source and carbon dioxide as the primary carbon source for biosynthesis.
Photoautotrophic light-powered CO2 fixation
Edge evidence
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photoautotrophic
uses energy source
light
METPO:2000010Photoautotrophy uses light as the energy source.
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DOI:10.3390/life10050071capture solar energy
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photosystem II
oxidizes
water
METPO:2000016Oxygenic photosynthesis extracts electrons from water through PSII.
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DOI:10.3390/life10050071uses it to split H2O
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water
oxidized to
molecular oxygen
METPO:2007405Water oxidation releases molecular oxygen.
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DOI:10.3390/life10050071split H2O molecules into O2
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photosystem II
feeds electrons into
photosynthetic electron transport
METPO:2007402PSII feeds electrons into the photosynthetic electron transport chain.
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DOI:10.3390/life10050071passes its reducing equivalents to an electron transfer chain
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photosynthetic electron transport
produces
ATP and NADPH
METPO:2000202Photosynthetic electron transport generates ATP and NADPH.
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DOI:10.3390/life10050071generate chemical energy (ATP) and reducing power (NADPH)
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carbon dioxide
fixed by
Calvin-Benson cycle
METPO:2007404CO2 is assimilated through the Calvin-Benson cycle in many photoautotrophs.
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DOI:10.1128/AEM.02473-10Calvin-Benson reductive pentose phosphate cycle
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RuBisCO
catalyzes
Calvin-Benson cycle
biolink:catalyzesRuBisCO is a key carboxylating enzyme for Calvin-Benson CO2 fixation.
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DOI:10.3390/life10050071Calvin cycle enzymes, RuBisCO
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Calvin-Benson cycle
produces
biomass
METPO:2000202Fixed carbon supports biosynthesis and biomass production.
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DOI:10.3390/life10050071fix ... CO2 into ... biomass
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photosynthetic electron transport
enables
Calvin-Benson cycle
RO:0002327Light-driven photosynthetic electron transport supplies the energy/reductant that drives CBB-cycle CO2 fixation.
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DOI:10.3389/fpls.2024.1417680
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carbon-concentrating mechanism
lowers
RuBisCO oxygenase activity
The CCM enriches intracellular inorganic carbon, suppressing the wasteful RuBisCO oxygenase reaction.
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DOI:10.3389/fpls.2024.1417680
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bicarbonate
diffuses into
carboxysome
Cytoplasmic bicarbonate enters the carboxysome where it is converted to CO2 for fixation.
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DOI:10.1111/ppl.14140
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carboxysomal carbonic anhydrase
converts
bicarbonate
Carboxysomal carbonic anhydrase dehydrates bicarbonate to CO2 to feed RuBisCO.
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DOI:10.1111/ppl.14140
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Provenance
- Source
- METPO (2025-11-25)
- Author
- Anthea Guo
- Definition source
- DOI:10.3390/life10050071
Parent traits (1)
Synonyms (6)
- anoxygenic_photoautotrophy
- anoxygenic_photoautotrophy_hydrogen_oxidation
- anoxygenic_photoautotrophy_iron_oxidation
- anoxygenic_photoautotrophy_sulfur_oxidation
- photoautotroph
- photoautotrophy
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000656[-1.879, -5.853, -1.491, +0.710, …]
Nearest neighbors in embedding space
- physiology photoheterotrophic 0.637
- physiology phototrophic 0.629
- physiology trophic type 0.461
- physiology hydrogenotrophic 0.455
- physiology carboxydotrophic 0.454
- physiology photolithotrophic 0.452
- physiology lithoautotrophic 0.445
- physiology photolithoautotrophic 0.439
Curation history
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SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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ADDED_CAUSAL_GRAPH · codex
Added DOI-backed causal graph for oxygenic light capture, ATP/NADPH generation, and Calvin-Benson CO2 fixation.
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ADDED_ORGANISM_EXAMPLE · claude
Added Synechocystis sp. PCC 6803 organism example with PMID-backed evidence.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 4 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×2, METPO:2000010×1, METPO:2000016×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:catalyzes×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007405×1, METPO:2007402×1, METPO:2007404×1).
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GROUND_CAUSAL_NODES · claude
Grounded 3 causal-node grounding field(s) via mappings/node_grounding.tsv (PATO:0001717×1, GO:0009767×1, GO:0019253×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007501×1).
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RETYPE_CAUSAL_NODES · claude
Re-typed 1 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: biomass: BIOLOGICAL_PROCESS → CHEMICAL ×1.
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A075WF79×1).
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ENRICH_CAUSAL_GRAPH · claude
Added 4 evidence-backed generic edges (5 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1).
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GROUND_CAUSAL_NODES · claude
Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0031470×1, CHEBI:17544×1).