photoautotrophic

METPO:1000656 · CLASS · REVIEWED

A trophic type characterized by the use of light as the energy source and carbon dioxide as the primary carbon source for biosynthesis.

Photoautotrophic light-powered CO2 fixation

DOI-backed graph linking light capture, photosynthetic electron transport, ATP/reductant supply, and Calvin-Benson carbon fixation.

Photoautotrophic light-powered CO2 fixation Interactive directed graph showing evidence-backed causal relationships for photoautotrophic.

Edge evidence

  • photoautotrophic uses energy source light METPO:2000010

    Photoautotrophy uses light as the energy source.

    • DOI:10.3390/life10050071 capture solar energy Supports light capture by cyanobacteria under photoautotrophic metabolism.
  • photosystem II oxidizes water METPO:2000016

    Oxygenic photosynthesis extracts electrons from water through PSII.

    • DOI:10.3390/life10050071 uses it to split H2O Supports water splitting by PSII in cyanobacteria.
  • water oxidized to molecular oxygen METPO:2007405

    Water oxidation releases molecular oxygen.

    • DOI:10.3390/life10050071 split H2O molecules into O2 Supports oxygen as the product of water splitting.
  • photosystem II feeds electrons into photosynthetic electron transport METPO:2007402

    PSII feeds electrons into the photosynthetic electron transport chain.

    • DOI:10.3390/life10050071 passes its reducing equivalents to an electron transfer chain Supports electron flow from PSII/plastoquinol into photosynthetic electron transport.
  • photosynthetic electron transport produces ATP and NADPH METPO:2000202

    Photosynthetic electron transport generates ATP and NADPH.

    • DOI:10.3390/life10050071 generate chemical energy (ATP) and reducing power (NADPH) Supports ATP and NADPH generation by photosynthetic electron transport.
  • carbon dioxide fixed by Calvin-Benson cycle METPO:2007404

    CO2 is assimilated through the Calvin-Benson cycle in many photoautotrophs.

    • DOI:10.1128/AEM.02473-10 Calvin-Benson reductive pentose phosphate cycle Supports Calvin-Benson cycle as an autotrophic CO2-fixation route.
  • RuBisCO catalyzes Calvin-Benson cycle biolink:catalyzes

    RuBisCO is a key carboxylating enzyme for Calvin-Benson CO2 fixation.

    • DOI:10.3390/life10050071 Calvin cycle enzymes, RuBisCO Supports RuBisCO as a Calvin-cycle enzyme tied to CO2 fixation rate.
  • Calvin-Benson cycle produces biomass METPO:2000202

    Fixed carbon supports biosynthesis and biomass production.

    • DOI:10.3390/life10050071 fix ... CO2 into ... biomass Supports CO2 fixation into biomass by cyanobacterial photoautotrophy.
  • photosynthetic electron transport enables Calvin-Benson cycle RO:0002327

    Light-driven photosynthetic electron transport supplies the energy/reductant that drives CBB-cycle CO2 fixation.

    • DOI:10.3389/fpls.2024.1417680 Phototrophs use light energy to drive a photosynthetic electron transport chain, and CO2 fixation occurs via the Calvin-Benson-Bassham cycle.
  • carbon-concentrating mechanism lowers RuBisCO oxygenase activity

    The CCM enriches intracellular inorganic carbon, suppressing the wasteful RuBisCO oxygenase reaction.

    • DOI:10.3389/fpls.2024.1417680 The CCM lowers RuBisCO's oxygenase reaction to below ~1% by enriching intracellular inorganic carbon.
  • bicarbonate diffuses into carboxysome

    Cytoplasmic bicarbonate enters the carboxysome where it is converted to CO2 for fixation.

    • DOI:10.1111/ppl.14140 Cytoplasmic HCO3- diffuses into the carboxysome.
  • carboxysomal carbonic anhydrase converts bicarbonate

    Carboxysomal carbonic anhydrase dehydrates bicarbonate to CO2 to feed RuBisCO.

    • DOI:10.1111/ppl.14140 Bicarbonate is converted back to CO2 by carbonic anhydrase inside carboxysomes (CA produces CO2).

Provenance

Source
METPO (2025-11-25)
Author
Anthea Guo
Definition source
DOI:10.3390/life10050071

Parent traits (1)

Synonyms (6)

  • anoxygenic_photoautotrophy RELATED_SYNONYM · metpo.owl
  • anoxygenic_photoautotrophy_hydrogen_oxidation RELATED_SYNONYM · metpo.owl
  • anoxygenic_photoautotrophy_iron_oxidation RELATED_SYNONYM · metpo.owl
  • anoxygenic_photoautotrophy_sulfur_oxidation RELATED_SYNONYM · metpo.owl
  • photoautotroph RELATED_SYNONYM · metpo.owl
  • photoautotrophy RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000656 [-1.879, -5.853, -1.491, +0.710, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · ADDED_CAUSAL_GRAPH · codex

    Added DOI-backed causal graph for oxygenic light capture, ATP/NADPH generation, and Calvin-Benson CO2 fixation.

  3. · ADDED_ORGANISM_EXAMPLE · claude

    Added Synechocystis sp. PCC 6803 organism example with PMID-backed evidence.

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 4 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×2, METPO:2000010×1, METPO:2000016×1).

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:catalyzes×1).

  6. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007405×1, METPO:2007402×1, METPO:2007404×1).

  7. · GROUND_CAUSAL_NODES · claude

    Grounded 3 causal-node grounding field(s) via mappings/node_grounding.tsv (PATO:0001717×1, GO:0009767×1, GO:0019253×1).

  8. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007501×1).

  9. · RETYPE_CAUSAL_NODES · claude

    Re-typed 1 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: biomass: BIOLOGICAL_PROCESS → CHEMICAL ×1.

  10. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A075WF79×1).

  11. · ENRICH_CAUSAL_GRAPH · claude

    Added 4 evidence-backed generic edges (5 new nodes) from the deep-research report.

  12. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1).

  13. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0031470×1, CHEBI:17544×1).