photoheterotrophic

METPO:1000657 · CLASS · REVIEWED

A trophic type in which an organism uses light as the energy source and organic compounds as the primary carbon source for biosynthesis.

Photoheterotrophic light-supported organic carbon assimilation

DOI-backed graph linking light capture, bacteriochlorophyll reaction centers, photosynthetic electron transport, ATP generation, and organic carbon assimilation.

Photoheterotrophic light-supported organic carbon assimilation Interactive directed graph showing evidence-backed causal relationships for photoheterotrophic.

Edge evidence

  • photoheterotrophic uses energy source light METPO:2000010

    Photoheterotrophic growth uses light as the energy input.

    • DOI:10.1016/B978-012373944-5.00083-3 light and reduced organic compounds Supports light as the energy source in photoheterotrophy.
  • bacteriochlorophyll part of photosynthetic reaction center biolink:part_of

    Bacteriochlorophyll pigments occur in reaction centers of many anoxygenic phototrophs.

    • DOI:10.1128/AEM.01747-12 reaction centers composed of bacteriochlorophyll Supports BChl-containing reaction centers in aerobic anoxygenic phototrophs.
  • light captured by photosynthetic reaction center

    Reaction centers capture light to initiate photochemical energy conversion.

    • DOI:10.1016/B978-0-12-809633-8.20672-9 utilize light as an energy source Supports reaction-center-based light utilization by chlorophototrophs.
  • photosynthetic reaction center initiates photosynthetic electron transport

    Photochemical charge separation drives photosynthetic electron transport.

    • DOI:10.1016/B978-0-12-809633-8.20672-9 light-induced redox chemistry Supports reaction-center photochemistry leading to electron transfer.
  • photosynthetic electron transport produces ATP METPO:2000202

    Photosynthetic electron transport conserves light energy as ATP.

    • DOI:10.1016/B978-0-12-809633-8.20672-9 can be used to produce ATP Supports ATP production downstream of phototrophic electron transfer.
  • photoheterotrophic uses carbon source organic carbon METPO:2000006

    Photoheterotrophs require organic compounds as the carbon source.

    • DOI:10.1016/B978-012373944-5.00083-3 reduced organic compounds Supports reduced organic compounds as the carbon source in photoheterotrophy.
  • organic carbon assimilated into biomass

    Light-supported photoheterotrophs assimilate supplied organic carbon into biomass.

    • DOI:10.1128/AEM.01747-12 accumulate the supplied organic carbon Supports organic carbon assimilation into biomass under light.
  • light activates proteorhodopsin proton pumping RO:0002213

    Light drives proton pumping by proteorhodopsin in rhodopsin-based photoheterotrophs.

    • DOI:10.1007/s12275-024-00125-0 the light-driven proton pumping by PR
  • proteorhodopsin proton pumping generates membrane potential biolink:produces

    Proteorhodopsin proton transport establishes a membrane potential.

    • DOI:10.1007/s12275-024-00125-0 PR-mediated proton transport could generate a sufficient membrane potential for ATP production
  • membrane potential enables ATP production RO:0002327

    The membrane potential drives ATP production.

    • DOI:10.1007/s12275-024-00125-0 generate a sufficient membrane potential for ATP production
  • proteorhodopsin cannot generate NAD(P)H for anabolic metabolism

    Boundary edge: proteorhodopsin phototrophy yields ATP but no reducing power for biosynthesis.

    • DOI:10.4014/jmb.2410.10034 PR can never be harnessed to generate NAD(P)H for anabolic metabolism
  • aerobic anoxygenic phototrophs perform photophosphorylation

    Aerobic anoxygenic phototrophs generate ATP via photophosphorylation.

    • DOI:10.1186/s40793-024-00573-6 AAPs are facultative photoheterotrophs that harvest light energy and generate ATP by photophosphorylation
  • photophosphorylation produces ATP METPO:2000202

    Photophosphorylation conserves light energy as ATP.

    • DOI:10.1186/s40793-024-00573-6 generate ATP by photophosphorylation using a unique type of bacteriochlorophyll-a-containing reaction center
  • aerobic anoxygenic phototrophs relies primarily on dissolved organic matter

    Aerobic anoxygenic phototrophs primarily rely on dissolved organic matter as their energy/carbon source.

    • DOI:10.1186/s40793-024-00573-6 they primarily rely on dissolved organic matter as an energy source

Provenance

Source
METPO (2025-11-25)
Author
Luke Wang
Definition source
DOI:10.1016/B978-012373944-5.00083-3

Parent traits (1)

Synonyms (2)

  • photoheterotroph RELATED_SYNONYM · metpo.owl
  • photoheterotrophy RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000657 [-0.306, -3.156, -1.761, +2.105, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · ADDED_CAUSAL_GRAPH · codex

    Added DOI-backed causal graph for light capture, bacteriochlorophyll reaction centers, ATP generation, and organic carbon assimilation.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000010×1, METPO:2000202×1, METPO:2000006×1).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:part_of×1).

  5. · GROUND_CAUSAL_NODES · claude

    Grounded 3 causal-node grounding field(s) via mappings/node_grounding.tsv (PATO:0001717×1, GO:0009767×1, CHEBI:50860×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007501×1).

  7. · RETYPE_CAUSAL_NODES · claude

    Re-typed 1 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: biomass: BIOLOGICAL_PROCESS → CHEMICAL ×1.

  8. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:38201×1).

  9. · ENRICH_CAUSAL_GRAPH · claude

    Added 7 evidence-backed generic edges (8 new nodes) from the deep-research report.

  10. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 4 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002213×1, biolink:produces×1, RO:0002327×1, METPO:2000202×1).

  11. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A1D7QWW9×1).