phototrophic

METPO:1000660 · CLASS · REVIEWED

A trophic type characterized by the use of light as the primary energy source for metabolic processes, regardless of carbon source.

Phototrophic light-energy capture mechanism

DOI-backed graph for bacterial light capture, photosynthetic electron transport, ATP generation, and reductant formation.

Phototrophic light-energy capture mechanism Interactive directed graph showing evidence-backed causal relationships for phototrophic.

Edge evidence

  • phototrophic uses energy source light METPO:2000010

    Phototrophic growth uses light as the energy input.

    • DOI:10.3389/fmicb.2011.00165 use light as the energy source Supports light as the defining energy source for phototrophic bacteria.
  • bacteriochlorophyll part of photosynthetic reaction center biolink:part_of

    Bacteriochlorophyll-containing complexes harvest light in many bacterial phototrophs.

    • DOI:10.1093/femsre/fuv032 bacteriochlorophyll-containing reaction centers Supports pigment-reaction-center coupling in aerobic anoxygenic phototrophs.
  • light captured by photosynthetic reaction center

    Reaction centers convert absorbed light into charge separation.

    • DOI:10.1093/femsre/fuv032 harvest light energy Supports light harvesting by reaction centers.
  • photosynthetic reaction center initiates photosynthetic electron transport

    Photochemical reaction centers initiate electron transport.

    • DOI:10.3389/fmicb.2011.00165 light-induced electron transport Supports reaction-center-driven photosynthetic electron transport.
  • photosynthetic electron transport produces ATP METPO:2000202

    Photosynthetic electron transport produces ATP.

    • DOI:10.3389/fmicb.2011.00165 produce phosphate bond energy (ATP) Supports ATP as a product of phototrophic electron transport.
  • photosynthetic electron transport produces reducing power METPO:2000202

    Photosynthetic electron transport generates reducing equivalents.

    • DOI:10.3389/fmicb.2011.00165 reductants [e.g., NAD(P)H and reduced ferredoxin] Supports reductant production by photosynthetic electron transport.
  • carotenoid transfers excitation energy to bacteriochlorophyll

    Excitation energy captured by carotenoids is transferred to BChl a.

    • DOI:10.1093/femsre/fuv032 The excitation energy captured by the carotenoids is transferred within picoseconds to the BChl a molecules.
  • carotenoid extends light absorption into blue-green light

    Carotenoids serve as auxiliary pigments extending absorption to the blue-green spectrum.

    • DOI:10.1093/femsre/fuv032 Carotenoids serve as auxiliary pigments which extend absorption to the blue-green part of the spectrum.
  • photosynthetic electron transport forms proton motive force biolink:produces

    Photosynthetic electron transport generates a proton motive force.

    • DOI:10.1128/aem.00863-24 Along with electron transport, proton motive force (PMF) is formed.
  • proton motive force powers ATP synthase complex

    Proton motive force drives ATP synthase complexes.

    • DOI:10.1128/aem.00863-24 and powers ATP synthase complexes.
  • ATP synthase complex produces ATP METPO:2000202

    ATP synthase complexes generate ATP from the proton motive force.

    • DOI:10.1128/aem.00863-24 PMF powers ATP synthase complexes that synthesize ATP, the cellular energy carrier.
  • rhodopsin pumps ion transport across membrane

    Rhodopsins use light to pump ions across the membrane (retinalophototrophy).

    • DOI:10.1038/s43705-023-00334-5 retinalophototrophy, which uses rhodopsins to pump ions through the membrane.

Provenance

Source
METPO (2025-11-25)
Author
Anthea Guo
Definition source
DOI:10.3389/fmicb.2011.00165

Parent traits (1)

Synonyms (3)

  • TT_phototroph RELATED_SYNONYM · metpo.owl
  • aerobic_anoxygenic_phototrophy RELATED_SYNONYM · metpo.owl
  • phototroph RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000660 [-2.096, -3.602, -1.726, +2.700, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · ADDED_CAUSAL_GRAPH · codex

    Added DOI-backed causal graph for light capture, reaction centers, photosynthetic electron transport, ATP, and reductant generation.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×2, METPO:2000010×1).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:part_of×1).

  5. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (PATO:0001717×1, GO:0009767×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007503×1).

  7. · RETYPE_CAUSAL_NODES · claude

    Re-typed 1 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: reducing power: CHEMICAL → CAPACITY ×1.

  8. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:38201×1).

  9. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (6 new nodes) from the deep-research report.

  10. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:produces×1, METPO:2000202×1).

  11. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:23044×1).

  12. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A059ZUX4×1).