phototrophic
METPO:1000660 · CLASS · REVIEWED
A trophic type characterized by the use of light as the primary energy source for metabolic processes, regardless of carbon source.
Phototrophic light-energy capture mechanism
Edge evidence
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phototrophic
uses energy source
light
METPO:2000010Phototrophic growth uses light as the energy input.
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DOI:10.3389/fmicb.2011.00165use light as the energy source
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bacteriochlorophyll
part of
photosynthetic reaction center
biolink:part_ofBacteriochlorophyll-containing complexes harvest light in many bacterial phototrophs.
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DOI:10.1093/femsre/fuv032bacteriochlorophyll-containing reaction centers
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light
captured by
photosynthetic reaction center
Reaction centers convert absorbed light into charge separation.
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DOI:10.1093/femsre/fuv032harvest light energy
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photosynthetic reaction center
initiates
photosynthetic electron transport
Photochemical reaction centers initiate electron transport.
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DOI:10.3389/fmicb.2011.00165light-induced electron transport
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photosynthetic electron transport
produces
ATP
METPO:2000202Photosynthetic electron transport produces ATP.
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DOI:10.3389/fmicb.2011.00165produce phosphate bond energy (ATP)
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photosynthetic electron transport
produces
reducing power
METPO:2000202Photosynthetic electron transport generates reducing equivalents.
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DOI:10.3389/fmicb.2011.00165reductants [e.g., NAD(P)H and reduced ferredoxin]
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carotenoid
transfers excitation energy to
bacteriochlorophyll
Excitation energy captured by carotenoids is transferred to BChl a.
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DOI:10.1093/femsre/fuv032
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carotenoid
extends light absorption into
blue-green light
Carotenoids serve as auxiliary pigments extending absorption to the blue-green spectrum.
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DOI:10.1093/femsre/fuv032
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photosynthetic electron transport
forms
proton motive force
biolink:producesPhotosynthetic electron transport generates a proton motive force.
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DOI:10.1128/aem.00863-24
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proton motive force
powers
ATP synthase complex
Proton motive force drives ATP synthase complexes.
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DOI:10.1128/aem.00863-24
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ATP synthase complex
produces
ATP
METPO:2000202ATP synthase complexes generate ATP from the proton motive force.
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DOI:10.1128/aem.00863-24
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rhodopsin
pumps
ion transport across membrane
Rhodopsins use light to pump ions across the membrane (retinalophototrophy).
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DOI:10.1038/s43705-023-00334-5
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Provenance
- Source
- METPO (2025-11-25)
- Author
- Anthea Guo
- Definition source
- DOI:10.3389/fmicb.2011.00165
Parent traits (1)
Synonyms (3)
- TT_phototroph
- aerobic_anoxygenic_phototrophy
- phototroph
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000660[-2.096, -3.602, -1.726, +2.700, …]
Nearest neighbors in embedding space
- physiology photoheterotrophic 0.849
- physiology photoautotrophic 0.629
- physiology trophic type 0.471
- physiology photolithotrophic 0.463
- physiology hydrogenotrophic 0.459
- physiology carboxydotrophic 0.451
- physiology photoorganoheterotrophic 0.449
- physiology photolithoautotrophic 0.445
Curation history
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·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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ADDED_CAUSAL_GRAPH · codex
Added DOI-backed causal graph for light capture, reaction centers, photosynthetic electron transport, ATP, and reductant generation.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×2, METPO:2000010×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:part_of×1).
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GROUND_CAUSAL_NODES · claude
Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (PATO:0001717×1, GO:0009767×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007503×1).
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RETYPE_CAUSAL_NODES · claude
Re-typed 1 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: reducing power: CHEMICAL → CAPACITY ×1.
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:38201×1).
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ENRICH_CAUSAL_GRAPH · claude
Added 6 evidence-backed generic edges (6 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:produces×1, METPO:2000202×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:23044×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A059ZUX4×1).